RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PPP4CP60510 307 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 HDLBPQ00341 1268 aaKnown RBP17.5■□□□□ 0.39
VRK3-212ENST00000596814 GPR162Q16538 588 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 RNF20Q5VTR2 975 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 CREB3L3Q68CJ9 461 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 HHIPL2Q6UWX4 724 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 CRNKL1Q9BZJ0 848 aaKnown RBP17.5■□□□□ 0.39
VRK3-212ENST00000596814 PALD1Q9ULE6 856 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 ZMYM6O95789 1325 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 PRKAB2O43741 272 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 CRKP46108 304 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 AGBL3Q8NEM8 1001 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 GMLQ99445 158 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 MRIQ9BWK5 157 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 NACAP1Q9BZK3 213 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 CTNNA3Q9UI47 895 aa17.5■□□□□ 0.39
VRK3-212ENST00000596814 NAV1Q8NEY1 1877 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 GSG1L2A8MUP6 293 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 SLC27A2O14975 620 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 FGAP02671 866 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 PLCG2P16885 1265 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 SDR42E1Q8WUS8 393 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 NAPBQ9H115 298 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 EPB41L4AQ9HCS5 686 aaPredicted RBP17.49■□□□□ 0.39
VRK3-212ENST00000596814 SERPINA10Q9UK55 444 aa17.49■□□□□ 0.39
VRK3-212ENST00000596814 ZBTB12Q9Y330 459 aaPredicted RBP17.49■□□□□ 0.39
VRK3-212ENST00000596814 FOCADQ5VW36 1801 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 ECM29Q5VYK3 1845 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 BAZ2AQ9UIF9 1905 aaKnown RBP17.48■□□□□ 0.39
VRK3-212ENST00000596814 ZKSCAN1P17029 563 aaPredicted RBP17.48■□□□□ 0.39
VRK3-212ENST00000596814 ALX1Q15699 326 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 IFNL3Q8IZI9 196 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 SH3RF3Q8TEJ3 882 aaPredicted RBP17.48■□□□□ 0.39
VRK3-212ENST00000596814 KCNB2Q92953 911 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 KIF2CQ99661 725 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 HDAC9Q9UKV0 1011 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 SNX14Q9Y5W7 946 aa17.48■□□□□ 0.39
VRK3-212ENST00000596814 ANP32AP39687 249 aaKnown RBP17.47■□□□□ 0.39
VRK3-212ENST00000596814 TDO2P48775 406 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 RASEFQ8IZ41 740 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 ZDHHC15Q96MV8 337 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 RNF181Q9P0P0 153 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 LAMB1P07942 1786 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 ZNF541Q9H0D2 1346 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 GRIN3BO60391 1043 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 CYP21A2P08686 494 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 RPS12P25398 132 aaKnown RBP17.47■□□□□ 0.39
VRK3-212ENST00000596814 RBM5P52756 815 aaKnown RBP eCLIP17.47■□□□□ 0.39
VRK3-212ENST00000596814 IMMTQ16891 758 aaKnown RBP17.47■□□□□ 0.39
VRK3-212ENST00000596814 TEX11Q8IYF3 940 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 OGFOD1Q8N543 542 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 IL17RAQ96F46 866 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 DDRGK1Q96HY6 314 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 ATP8A2Q9NTI2 1148 aa17.47■□□□□ 0.39
VRK3-212ENST00000596814 USP5P45974 858 aa17.46■□□□□ 0.39
VRK3-212ENST00000596814 RHBDL3P58872 404 aa17.46■□□□□ 0.39
VRK3-212ENST00000596814 GIMAP6Q6P9H5 292 aa17.46■□□□□ 0.39
VRK3-212ENST00000596814 DDX60LQ5H9U9 1706 aaKnown RBP17.45■□□□□ 0.38
VRK3-212ENST00000596814 USP17L8P0C7I0 530 aa17.45■□□□□ 0.38
VRK3-212ENST00000596814 RABEP1Q15276 862 aa17.45■□□□□ 0.38
VRK3-212ENST00000596814 CFAP100Q494V2 611 aa17.45■□□□□ 0.38
VRK3-212ENST00000596814 APOBEC3HQ6NTF7 200 aaKnown RBP17.45■□□□□ 0.38
VRK3-212ENST00000596814 GJA3Q9Y6H8 435 aa17.45■□□□□ 0.38
VRK3-212ENST00000596814 TSGA10IPQ3SY00 556 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 C9orf131Q5VYM1 1079 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 DCP1AQ9NPI6 582 aaPredicted RBP17.44■□□□□ 0.38
VRK3-212ENST00000596814 ZNF213O14771 459 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 HAND2P61296 217 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 KRT32Q14532 448 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 TGFBRAP1Q8WUH2 860 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 USP40Q9NVE5 1235 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 PCDHAC2Q9Y5I4 1007 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 TAF6LQ9Y6J9 622 aa17.44■□□□□ 0.38
VRK3-212ENST00000596814 GMPSP49915 693 aaPredicted RBP17.43■□□□□ 0.38
VRK3-212ENST00000596814 MMP14P50281 582 aa17.43■□□□□ 0.38
VRK3-212ENST00000596814 CDC42EP5Q6NZY7 148 aa17.43■□□□□ 0.38
VRK3-212ENST00000596814 MYH1P12882 1939 aa17.43■□□□□ 0.38
VRK3-212ENST00000596814 UTRNP46939 3433 aa17.43■□□□□ 0.38
VRK3-212ENST00000596814 FLT1P17948 1338 aa17.43■□□□□ 0.38
VRK3-212ENST00000596814 DLGAP5Q15398 846 aa17.42■□□□□ 0.38
VRK3-212ENST00000596814 ADCK5Q3MIX3 580 aa17.42■□□□□ 0.38
VRK3-212ENST00000596814 MAPKAPK5Q8IW41 473 aa17.42■□□□□ 0.38
VRK3-212ENST00000596814 DPF2Q92785 391 aa17.42■□□□□ 0.38
VRK3-212ENST00000596814 JAKMIP1Q96N16 626 aaKnown RBP17.42■□□□□ 0.38
VRK3-212ENST00000596814 ARPP21Q9UBL0 812 aaPredicted RBP17.42■□□□□ 0.38
VRK3-212ENST00000596814 SPDYE2BA6NHP3 402 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 SPDYE6P0CI01 402 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 PSMA5P28066 241 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 GPC2Q8N158 579 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 MTMR14Q8NCE2 650 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 TM6SF1Q9BZW5 370 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 MCM9Q9NXL9 1143 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 MKRN1Q9UHC7 482 aaKnown RBP17.41■□□□□ 0.38
VRK3-212ENST00000596814 MINDY4BA8MYZ0 360 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 WDHD1O75717 1129 aaPredicted RBP17.41■□□□□ 0.38
VRK3-212ENST00000596814 CASTP20810 708 aaKnown RBP17.41■□□□□ 0.38
VRK3-212ENST00000596814 ZNF280AP59817 542 aaPredicted RBP17.41■□□□□ 0.38
VRK3-212ENST00000596814 PPARAQ07869 468 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 CTR9Q6PD62 1173 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 STOX1Q6ZVD7 989 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms