RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ADGRA1Q86SQ6 560 aa13.65□□□□□ -0.22
VRK3-210ENST00000596121 DZIP1Q86YF9 867 aaKnown RBP13.65□□□□□ -0.22
VRK3-210ENST00000596121 USP40Q9NVE5 1235 aa13.65□□□□□ -0.22
VRK3-210ENST00000596121 RAI14Q9P0K7 980 aa13.65□□□□□ -0.22
VRK3-210ENST00000596121 FAM198AQ9UFP1 575 aa13.65□□□□□ -0.22
VRK3-210ENST00000596121 PPP2R3BQ9Y5P8 575 aa13.65□□□□□ -0.22
VRK3-210ENST00000596121 MROH7-TTC4A0A0A0MT08 1334 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 GPR75-ASB3A0A0A6YYF3 556 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 USP2O75604 605 aaPredicted RBP13.64□□□□□ -0.23
VRK3-210ENST00000596121 IFIT2P09913 472 aaKnown RBP13.64□□□□□ -0.23
VRK3-210ENST00000596121 BTDP43251 543 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 RHBDL3P58872 404 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 FKBP1BP68106 108 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 LDLRAD1Q5T700 205 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 FKBP1CQ5VVH2 108 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 RGMBQ6NW40 437 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 EDC3Q96F86 508 aaKnown RBP13.64□□□□□ -0.23
VRK3-210ENST00000596121 LRP2BPQ9P2M1 347 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 MYH2Q9UKX2 1941 aa13.64□□□□□ -0.23
VRK3-210ENST00000596121 MYO5AQ9Y4I1 1855 aaKnown RBP13.63□□□□□ -0.23
VRK3-210ENST00000596121 TCP10Q12799 353 aa13.63□□□□□ -0.23
VRK3-210ENST00000596121 TNFAIP1Q13829 316 aa13.63□□□□□ -0.23
VRK3-210ENST00000596121 OTUD7AQ8TE49 926 aaPredicted RBP13.63□□□□□ -0.23
VRK3-210ENST00000596121 DDX4Q9NQI0 724 aaKnown RBP13.63□□□□□ -0.23
VRK3-210ENST00000596121 PAPPA2Q9BXP8 1791 aa13.63□□□□□ -0.23
VRK3-210ENST00000596121 RFX7Q2KHR2 1363 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 WDHD1O75717 1129 aaPredicted RBP13.62□□□□□ -0.23
VRK3-210ENST00000596121 IGHDP01880 384 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 SLURP2P0DP57 97 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 ZNF157P51786 506 aaPredicted RBP13.62□□□□□ -0.23
VRK3-210ENST00000596121 HDAC1Q13547 482 aaPredicted RBP13.62□□□□□ -0.23
VRK3-210ENST00000596121 TTLL12Q14166 644 aaPredicted RBP13.62□□□□□ -0.23
VRK3-210ENST00000596121 MAP3K11Q16584 847 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 SUPT20HL1Q3ZLR7 823 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 SH3BP5LQ7L8J4 393 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 FAM83AQ86UY5 434 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.62□□□□□ -0.23
VRK3-210ENST00000596121 CLMNQ96JQ2 1002 aa13.62□□□□□ -0.23
VRK3-210ENST00000596121 ANGEL1Q9UNK9 670 aaKnown RBP13.62□□□□□ -0.23
VRK3-210ENST00000596121 SLC10A3P09131 477 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 ATP5JP18859 108 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 NF2P35240 595 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 ECE1P42892 770 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 TNNI2P48788 182 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 RGS3P49796 1198 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 TSHZ3Q63HK5 1081 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 RASAL3Q86YV0 1011 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 FAM151AQ8WW52 585 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 IDI2Q9BXS1 227 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 BOLA2Q9H3K6 86 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 WBP1LQ9NX94 342 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 TMOD2Q9NZR1 351 aa13.61□□□□□ -0.23
VRK3-210ENST00000596121 GOLIM4O00461 696 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 IDH1O75874 414 aaKnown RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 CHGBP05060 677 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 LDHCP07864 332 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 HSPA1AP0DMV8 641 aaKnown RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 HSPA1BP0DMV9 641 aaKnown RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 DYNLL1P63167 89 aaKnown RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 GSTO1P78417 241 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 SLFNL1Q499Z3 407 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 NAA16Q6N069 864 aaPredicted RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 ARMC9Q7Z3E5 817 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 SLF2Q8IX21 1173 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 SH3RF3Q8TEJ3 882 aaPredicted RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 DNAJC2Q99543 621 aaKnown RBP13.6□□□□□ -0.23
VRK3-210ENST00000596121 THSD7BQ9C0I4 1608 aa13.6□□□□□ -0.23
VRK3-210ENST00000596121 DDTLA6NHG4 134 aaPredicted RBP13.59□□□□□ -0.23
VRK3-210ENST00000596121 CYP7A1P22680 504 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 MAP2K2P36507 400 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 PPP4CP60510 307 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 KIF23Q02241 960 aaPredicted RBP13.59□□□□□ -0.23
VRK3-210ENST00000596121 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.59□□□□□ -0.23
VRK3-210ENST00000596121 MIGA2Q7L4E1 593 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 MAGEB6Q8N7X4 407 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 CCDC102AQ96A19 550 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 HAUS7Q99871 368 aa13.59□□□□□ -0.23
VRK3-210ENST00000596121 AATFQ9NY61 560 aaKnown RBP eCLIP13.59□□□□□ -0.23
VRK3-210ENST00000596121 FOXN1O15353 648 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 PPP1R12BO60237 982 aaPredicted RBP13.58□□□□□ -0.24
VRK3-210ENST00000596121 ENTPD3O75355 529 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 MKRN3Q13064 507 aaKnown RBP13.58□□□□□ -0.24
VRK3-210ENST00000596121 NOGQ13253 232 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 PICALMQ13492 652 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 AAMPQ13685 434 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 MIGA1Q8NAN2 632 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 CSRNP1Q96S65 589 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 ECHDC1Q9NTX5 307 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.58□□□□□ -0.24
VRK3-210ENST00000596121 SALL3Q9BXA9 1300 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 ATRNL1Q5VV63 1379 aa13.58□□□□□ -0.24
VRK3-210ENST00000596121 RPAP1Q9BWH6 1393 aaPredicted RBP13.58□□□□□ -0.24
VRK3-210ENST00000596121 TCRBV5S4A2TA0A5A2 114 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 PDE6AP16499 860 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 GJA5P36382 358 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 ANKRD45Q5TZF3 282 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 SMC5Q8IY18 1101 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.57□□□□□ -0.24
VRK3-210ENST00000596121 CNKSR2Q8WXI2 1034 aa13.57□□□□□ -0.24
VRK3-210ENST00000596121 PAG1Q9NWQ8 432 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms