RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PAXIP1Q6ZW49 1069 aaPredicted RBP18.31■□□□□ 0.52
UPF1-202ENST00000594243 GPR75-ASB3A0A0A6YYF3 556 aa18.3■□□□□ 0.52
UPF1-202ENST00000594243 VEGFBP49765 207 aa18.3■□□□□ 0.52
UPF1-202ENST00000594243 CACNB3P54284 484 aa18.3■□□□□ 0.52
UPF1-202ENST00000594243 NAA16Q6N069 864 aaPredicted RBP18.3■□□□□ 0.52
UPF1-202ENST00000594243 TMED8Q6PL24 325 aaPredicted RBP18.3■□□□□ 0.52
UPF1-202ENST00000594243 ARMC9Q7Z3E5 817 aa18.3■□□□□ 0.52
UPF1-202ENST00000594243 GPATCH3Q96I76 525 aa18.3■□□□□ 0.52
UPF1-202ENST00000594243 NOL10Q9BSC4 688 aaKnown RBP18.3■□□□□ 0.52
UPF1-202ENST00000594243 WDR33Q9C0J8 1336 aaKnown RBP18.29■□□□□ 0.52
UPF1-202ENST00000594243 PPP1R12BO60237 982 aaPredicted RBP18.29■□□□□ 0.52
UPF1-202ENST00000594243 MAP4K4O95819 1239 aaPredicted RBP18.29■□□□□ 0.52
UPF1-202ENST00000594243 BTDP43251 543 aa18.29■□□□□ 0.52
UPF1-202ENST00000594243 MAP3K12Q12852 859 aa18.29■□□□□ 0.52
UPF1-202ENST00000594243 NBPF12Q5TAG4 269 aaPredicted RBP18.29■□□□□ 0.52
UPF1-202ENST00000594243 JMYQ8N9B5 988 aa18.29■□□□□ 0.52
UPF1-202ENST00000594243 ZNF384Q8TF68 577 aa18.29■□□□□ 0.52
UPF1-202ENST00000594243 PIH1D3Q9NQM4 214 aaKnown RBP18.29■□□□□ 0.52
UPF1-202ENST00000594243 ECHDC1Q9NTX5 307 aa18.29■□□□□ 0.52
UPF1-202ENST00000594243 AKAP11Q9UKA4 1901 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 IDH1O75874 414 aaKnown RBP18.28■□□□□ 0.52
UPF1-202ENST00000594243 BAG3O95817 575 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 IRX6P78412 446 aaPredicted RBP18.28■□□□□ 0.52
UPF1-202ENST00000594243 ANKRD45Q5TZF3 282 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 RGMBQ6NW40 437 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 FAM151AQ8WW52 585 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 HOOK2Q96ED9 719 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 CAPNS2Q96L46 248 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 DNAJC2Q99543 621 aaKnown RBP18.28■□□□□ 0.52
UPF1-202ENST00000594243 TMEM39BQ9GZU3 492 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 BOLA2Q9H3K6 86 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 ANTXR1Q9H6X2 564 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 NDUFB9Q9Y6M9 179 aa18.28■□□□□ 0.52
UPF1-202ENST00000594243 PRKG1Q13976 671 aa18.27■□□□□ 0.52
UPF1-202ENST00000594243 CYP4F22Q6NT55 531 aa18.27■□□□□ 0.52
UPF1-202ENST00000594243 CCDC102AQ96A19 550 aa18.27■□□□□ 0.52
UPF1-202ENST00000594243 TEPSINQ96N21 525 aa18.27■□□□□ 0.52
UPF1-202ENST00000594243 HAUS7Q99871 368 aa18.27■□□□□ 0.52
UPF1-202ENST00000594243 IDI2Q9BXS1 227 aa18.27■□□□□ 0.52
UPF1-202ENST00000594243 MYH2Q9UKX2 1941 aa18.26■□□□□ 0.51
UPF1-202ENST00000594243 UBE2Q2LH0YL09 131 aa18.26■□□□□ 0.51
UPF1-202ENST00000594243 GOLIM4O00461 696 aa18.26■□□□□ 0.51
UPF1-202ENST00000594243 ZNF157P51786 506 aaPredicted RBP18.26■□□□□ 0.51
UPF1-202ENST00000594243 GRM1Q13255 1194 aa18.26■□□□□ 0.51
UPF1-202ENST00000594243 MAP3K11Q16584 847 aa18.26■□□□□ 0.51
UPF1-202ENST00000594243 ANGEL1Q9UNK9 670 aaKnown RBP18.26■□□□□ 0.51
UPF1-202ENST00000594243 PAPPA2Q9BXP8 1791 aa18.26■□□□□ 0.51
UPF1-202ENST00000594243 UNCXA6NJT0 531 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 ENTPD3O75355 529 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 PLCG2P16885 1265 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 PPP4CP60510 307 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 TCP10Q12799 353 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 NFIAQ12857 509 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 MOB2Q70IA6 237 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 CERS3Q8IU89 383 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 MAGEB6Q8N7X4 407 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 PAG1Q9NWQ8 432 aa18.25■□□□□ 0.51
UPF1-202ENST00000594243 TTC41PQ6P2S7 1318 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 USP2O75604 605 aaPredicted RBP18.24■□□□□ 0.51
UPF1-202ENST00000594243 IGHDP01880 384 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 CYP7A1P22680 504 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 MAP2K2P36507 400 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 IREB2P48200 963 aaKnown RBP18.24■□□□□ 0.51
UPF1-202ENST00000594243 RHBDL3P58872 404 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 SMC5Q8IY18 1101 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 AATFQ9NY61 560 aaKnown RBP eCLIP18.24■□□□□ 0.51
UPF1-202ENST00000594243 FAM198AQ9UFP1 575 aa18.24■□□□□ 0.51
UPF1-202ENST00000594243 RPAP1Q9BWH6 1393 aaPredicted RBP18.23■□□□□ 0.51
UPF1-202ENST00000594243 ERC2O15083 957 aa18.23■□□□□ 0.51
UPF1-202ENST00000594243 NPM3O75607 178 aaKnown RBP18.23■□□□□ 0.51
UPF1-202ENST00000594243 WDHD1O75717 1129 aaPredicted RBP18.23■□□□□ 0.51
UPF1-202ENST00000594243 RGS3P49796 1198 aa18.23■□□□□ 0.51
UPF1-202ENST00000594243 NOGQ13253 232 aa18.23■□□□□ 0.51
UPF1-202ENST00000594243 LDLRAD1Q5T700 205 aa18.23■□□□□ 0.51
UPF1-202ENST00000594243 SLC9C2Q5TAH2 1124 aa18.23■□□□□ 0.51
UPF1-202ENST00000594243 IFFO2Q5TF58 517 aa18.23■□□□□ 0.51
UPF1-202ENST00000594243 PICALMQ13492 652 aa18.22■□□□□ 0.51
UPF1-202ENST00000594243 DCAF15Q66K64 600 aa18.22■□□□□ 0.51
UPF1-202ENST00000594243 ADGRA1Q86SQ6 560 aa18.22■□□□□ 0.51
UPF1-202ENST00000594243 ANKRD13AQ8IZ07 590 aa18.22■□□□□ 0.51
UPF1-202ENST00000594243 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.22■□□□□ 0.514e-8■■■□□ 18.2
UPF1-202ENST00000594243 FZD1Q9UP38 647 aa18.22■□□□□ 0.51
UPF1-202ENST00000594243 SSC5DA1L4H1 1573 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 SLC10A3P09131 477 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 MX1P20591 662 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 MAP2K1Q02750 393 aaPredicted RBP18.21■□□□□ 0.51
UPF1-202ENST00000594243 B4GALNT3Q6L9W6 998 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 ZSCAN25Q6NSZ9 544 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 ZSCAN29Q8IWY8 852 aaPredicted RBP18.21■□□□□ 0.51
UPF1-202ENST00000594243 CDAN1Q8IWY9 1227 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 TEX11Q8IYF3 940 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 SH3RF3Q8TEJ3 882 aaPredicted RBP18.21■□□□□ 0.51
UPF1-202ENST00000594243 SLC10A4Q96EP9 437 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 EDC3Q96F86 508 aaKnown RBP18.21■□□□□ 0.51
UPF1-202ENST00000594243 MAST2Q6P0Q8 1798 aa18.21■□□□□ 0.51
UPF1-202ENST00000594243 FAM155AB1AL88 458 aaPredicted RBP18.2■□□□□ 0.5
UPF1-202ENST00000594243 AOC2O75106 756 aa18.2■□□□□ 0.5
UPF1-202ENST00000594243 GLRX3O76003 335 aaKnown RBP18.2■□□□□ 0.5
UPF1-202ENST00000594243 ZFPM1Q8IX07 1006 aa18.2■□□□□ 0.5
UPF1-202ENST00000594243 DDX4Q9NQI0 724 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms