RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 KIAA1468Q9P260 1216 aa12.58□□□□□ -0.4
VPS4B-206ENST00000591475 A0A0G2JLW4 131 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 H7C1W4 665 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 RGL2O15211 777 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 SLU7O95391 586 aaKnown RBP12.57□□□□□ -0.4
VPS4B-206ENST00000591475 FDPSP14324 419 aaKnown RBP12.57□□□□□ -0.4
VPS4B-206ENST00000591475 CHST3Q7LGC8 479 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 LINC00301Q8NCQ3 95 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 ERCC4Q92889 916 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-206ENST00000591475 FBXW7Q969H0 707 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 ZNF652Q9Y2D9 606 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 NRDCO43847 1150 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 DHX16O60231 1041 aaKnown RBP12.57□□□□□ -0.4
VPS4B-206ENST00000591475 CAMTA2O94983 1202 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 TIMM10P62072 90 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 LRRFIP1Q32MZ4 808 aaKnown RBP12.57□□□□□ -0.4
VPS4B-206ENST00000591475 CLEC4GQ6UXB4 293 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 PROM2Q8N271 834 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 C8orf76Q96K31 380 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 POLR3EQ9NVU0 708 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 CLIC4Q9Y696 253 aa12.57□□□□□ -0.4
VPS4B-206ENST00000591475 M0R2C6 588 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 PPFIA3O75145 1194 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 SMC2O95347 1197 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 KCNJ6P48051 423 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 NLRP12P59046 1061 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 DPCR1Q3MIW9 517 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 KMT5BQ4FZB7 885 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 ZNF771Q7L3S4 317 aaPredicted RBP12.56□□□□□ -0.4
VPS4B-206ENST00000591475 BRAPQ7Z569 592 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS4B-206ENST00000591475 XPO4Q9C0E2 1151 aaKnown RBP12.56□□□□□ -0.4
VPS4B-206ENST00000591475 C4AP0C0L4 1744 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 C4BP0C0L5 1744 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 MYH7P12883 1935 aa12.56□□□□□ -0.4
VPS4B-206ENST00000591475 PSDA5PKW4 1024 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-206ENST00000591475 SPTLC2O15270 562 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 SLC3A2P08195 630 aaKnown RBP12.55□□□□□ -0.4
VPS4B-206ENST00000591475 ADRA2BP18089 450 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 TMC6Q7Z403 805 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 KRT222Q8N1A0 295 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 IFNKQ9P0W0 207 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 TAF1LQ8IZX4 1826 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 EYA2O00167 538 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 SOCS7O14512 581 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 TUBB4AP04350 444 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 SFPQP23246 707 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS4B-206ENST00000591475 IMMTQ16891 758 aaKnown RBP12.55□□□□□ -0.4
VPS4B-206ENST00000591475 TRAPPC3LQ5T215 181 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 TTLL5Q6EMB2 1281 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 SYNE3Q6ZMZ3 975 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 NLRP10Q86W26 655 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 ZNF34Q8IZ26 560 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 FBXO18Q8NFZ0 1043 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 PPP1R13BQ96KQ4 1090 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS4B-206ENST00000591475 NARFQ9UHQ1 456 aa12.55□□□□□ -0.4
VPS4B-206ENST00000591475 V9GYY5 206 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-206ENST00000591475 A0A1B0GUL7 405 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ZPR1O75312 459 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 CIAO1O76071 339 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 POLR3DP05423 398 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-206ENST00000591475 GPTP24298 496 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ELF2Q15723 593 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 MYSM1Q5VVJ2 828 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 E4F1Q66K89 784 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ARHGEF1Q92888 912 aaKnown RBP12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ORC3Q9UBD5 711 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-206ENST00000591475 KLF18A0A0U1RQI7 1052 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 GOLGA8BA8MQT2 603 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 PRC1O43663 620 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 IGSF3O75054 1194 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ZNF202O95125 648 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 PCCAP05165 728 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-206ENST00000591475 RFC4P35249 363 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 PARP10Q53GL7 1025 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 OTUD7BQ6GQQ9 843 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ARMCX5Q6P1M9 558 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 FBXO38Q6PIJ6 1188 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 ZBTB38Q8NAP3 1195 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-206ENST00000591475 L2HGDHQ9H9P8 463 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 NEDD4P46934 1319 aa12.54□□□□□ -0.4
VPS4B-206ENST00000591475 CPLX1O14810 134 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 IKBKBO14920 756 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 CCP110O43303 1012 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 ZFYP08048 801 aaPredicted RBP12.53□□□□□ -0.4
VPS4B-206ENST00000591475 CMA1P23946 247 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 SF3B2Q13435 895 aaKnown RBP12.53□□□□□ -0.4
VPS4B-206ENST00000591475 LRRC24Q50LG9 513 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 ANO1Q5XXA6 986 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 OSBP2Q969R2 916 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 GPHNQ9NQX3 736 aaPredicted RBP12.53□□□□□ -0.4
VPS4B-206ENST00000591475 FAM53CQ9NYF3 392 aa12.53□□□□□ -0.4
VPS4B-206ENST00000591475 BIN1O00499 593 aa12.52□□□□□ -0.4
VPS4B-206ENST00000591475 MB21D2Q8IYB1 491 aaPredicted RBP12.52□□□□□ -0.4
VPS4B-206ENST00000591475 RGS22Q8NE09 1264 aa12.52□□□□□ -0.4
VPS4B-206ENST00000591475 TRMT112Q9UI30 125 aaKnown RBP12.52□□□□□ -0.4
VPS4B-206ENST00000591475 NIP7Q9Y221 180 aaKnown RBP eCLIP12.52□□□□□ -0.4
VPS4B-206ENST00000591475 TNS1Q9HBL0 1735 aaKnown RBP12.52□□□□□ -0.41
VPS4B-206ENST00000591475 UBN2Q6ZU65 1347 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms