RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 ZMYND8Q9ULU4 1186 aaPredicted RBP14.03□□□□□ -0.16
ZNF540-209ENST00000590588 KCNH4Q9UQ05 1017 aa14.03□□□□□ -0.16
ZNF540-209ENST00000590588 PLIN1O60240 522 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 HIBADHP31937 336 aaKnown RBP14.02□□□□□ -0.17
ZNF540-209ENST00000590588 CASP7P55210 303 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 HDLBPQ00341 1268 aaKnown RBP14.02□□□□□ -0.17
ZNF540-209ENST00000590588 CALD1Q05682 793 aaKnown RBP14.02□□□□□ -0.17
ZNF540-209ENST00000590588 IRF5Q13568 498 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 C7orf61Q8IZ16 206 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 ZNF341Q9BYN7 854 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 MYH16Q9H6N6 1097 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 TMOD2Q9NZR1 351 aa14.02□□□□□ -0.17
ZNF540-209ENST00000590588 ELNP15502 786 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 RALBP1Q15311 655 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 FKBP1CQ5VVH2 108 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 MIGA2Q7L4E1 593 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 ANKLE1Q8NAG6 615 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 STK31Q9BXU1 1019 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 PRDM6Q9NQX0 595 aa14.01□□□□□ -0.17
ZNF540-209ENST00000590588 CYP2C8P10632 490 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 INPP5BP32019 993 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 MAGEA10P43363 369 aaPredicted RBP14□□□□□ -0.17
ZNF540-209ENST00000590588 CACNB3P54284 484 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 MOGSQ13724 837 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 WDR43Q15061 677 aaKnown RBP eCLIP14□□□□□ -0.17
ZNF540-209ENST00000590588 LDHAL6AQ6ZMR3 332 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 TEKT1Q969V4 418 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 MRIQ9BWK5 157 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 UBE2OQ9C0C9 1292 aaKnown RBP14□□□□□ -0.17
ZNF540-209ENST00000590588 CHMP3Q9Y3E7 222 aa14□□□□□ -0.17
ZNF540-209ENST00000590588 RPTORQ8N122 1335 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 CXCL11O14625 94 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 SYN1P17600 705 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 GYG1P46976 350 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 UBE4AQ14139 1066 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 FAM109BQ6ICB4 259 aaPredicted RBP13.99□□□□□ -0.17
ZNF540-209ENST00000590588 GPAT2Q6NUI2 795 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 DIS3LQ8TF46 1054 aaKnown RBP13.99□□□□□ -0.17
ZNF540-209ENST00000590588 FAM84BQ96KN1 310 aaPredicted RBP13.99□□□□□ -0.17
ZNF540-209ENST00000590588 NBPF3Q9H094 633 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 CNNM1Q9NRU3 951 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 ZNF112Q9UJU3 913 aa13.99□□□□□ -0.17
ZNF540-209ENST00000590588 ARAP2Q8WZ64 1704 aa13.98□□□□□ -0.17
ZNF540-209ENST00000590588 TNPO2O14787 897 aaKnown RBP13.98□□□□□ -0.17
ZNF540-209ENST00000590588 CCDC57Q2TAC2 916 aa13.98□□□□□ -0.17
ZNF540-209ENST00000590588 TAF7LQ5H9L4 462 aa13.98□□□□□ -0.17
ZNF540-209ENST00000590588 FASTKD5Q7L8L6 764 aaKnown RBP13.98□□□□□ -0.17
ZNF540-209ENST00000590588 TSPYL6Q8N831 410 aa13.98□□□□□ -0.17
ZNF540-209ENST00000590588 ZDHHC15Q96MV8 337 aa13.98□□□□□ -0.17
ZNF540-209ENST00000590588 ADAMTS8Q9UP79 889 aa13.98□□□□□ -0.17
ZNF540-209ENST00000590588 POTEB2H3BUK9 544 aa13.97□□□□□ -0.17
ZNF540-209ENST00000590588 FOXO4P98177 505 aa13.97□□□□□ -0.17
ZNF540-209ENST00000590588 LINS1Q8NG48 757 aa13.97□□□□□ -0.17
ZNF540-209ENST00000590588 TBC1D22AQ8WUA7 517 aa13.97□□□□□ -0.17
ZNF540-209ENST00000590588 COA7Q96BR5 231 aa13.97□□□□□ -0.17
ZNF540-209ENST00000590588 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.97□□□□□ -0.17
ZNF540-209ENST00000590588 TAOK2Q9UL54 1235 aa13.97□□□□□ -0.17
ZNF540-209ENST00000590588 SLC4A2P04920 1241 aa13.96□□□□□ -0.17
ZNF540-209ENST00000590588 GRIK5Q16478 980 aa13.96□□□□□ -0.17
ZNF540-209ENST00000590588 NOL9Q5SY16 702 aaKnown RBP13.96□□□□□ -0.17
ZNF540-209ENST00000590588 APOBEC3HQ6NTF7 200 aaKnown RBP13.96□□□□□ -0.17
ZNF540-209ENST00000590588 G2E3Q7L622 706 aa13.96□□□□□ -0.17
ZNF540-209ENST00000590588 VPS37DQ86XT2 251 aa13.96□□□□□ -0.17
ZNF540-209ENST00000590588 ZNF594Q96JF6 807 aaPredicted RBP13.96□□□□□ -0.17
ZNF540-209ENST00000590588 C11orf49Q9H6J7 331 aa13.96□□□□□ -0.17
ZNF540-209ENST00000590588 RPAP1Q9BWH6 1393 aaPredicted RBP13.96□□□□□ -0.18
ZNF540-209ENST00000590588 SPTBN5Q9NRC6 3674 aaKnown RBP13.95□□□□□ -0.18
ZNF540-209ENST00000590588 FRAT2O75474 233 aaPredicted RBP13.95□□□□□ -0.18
ZNF540-209ENST00000590588 LMBR1LQ6UX01 489 aa13.95□□□□□ -0.18
ZNF540-209ENST00000590588 FAM151AQ8WW52 585 aa13.95□□□□□ -0.18
ZNF540-209ENST00000590588 DNAAF4Q8WXU2 420 aa13.95□□□□□ -0.18
ZNF540-209ENST00000590588 GUCD1Q96NT3 240 aa13.95□□□□□ -0.18
ZNF540-209ENST00000590588 SLC45A1Q9Y2W3 748 aa13.95□□□□□ -0.18
ZNF540-209ENST00000590588 MGAMO43451 1857 aa13.94□□□□□ -0.18
ZNF540-209ENST00000590588 CHAF1AQ13111 956 aaPredicted RBP13.94□□□□□ -0.18
ZNF540-209ENST00000590588 HHIPL2Q6UWX4 724 aa13.94□□□□□ -0.18
ZNF540-209ENST00000590588 FBXO33Q7Z6M2 555 aa13.94□□□□□ -0.18
ZNF540-209ENST00000590588 SMCR8Q8TEV9 937 aaPredicted RBP13.94□□□□□ -0.18
ZNF540-209ENST00000590588 HMX1Q9NP08 348 aaPredicted RBP13.94□□□□□ -0.18
ZNF540-209ENST00000590588 SUGT1Q9Y2Z0 365 aa13.94□□□□□ -0.18
ZNF540-209ENST00000590588 ALPK3Q96L96 1907 aa13.94□□□□□ -0.18
ZNF540-209ENST00000590588 MAST3O60307 1309 aa13.93□□□□□ -0.18
ZNF540-209ENST00000590588 A0A0G2JLL6 359 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-209ENST00000590588 HMGCRP04035 888 aa13.93□□□□□ -0.18
ZNF540-209ENST00000590588 FKBP5Q13451 457 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-209ENST00000590588 CAVIN4Q5BKX8 364 aa13.93□□□□□ -0.18
ZNF540-209ENST00000590588 PRRT2Q7Z6L0 340 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-209ENST00000590588 IQSEC3Q9UPP2 1182 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-209ENST00000590588 ZHX2Q9Y6X8 837 aa13.93□□□□□ -0.18
ZNF540-209ENST00000590588 EYSQ5T1H1 3165 aa13.92□□□□□ -0.18
ZNF540-209ENST00000590588 APAF1O14727 1248 aa13.92□□□□□ -0.18
ZNF540-209ENST00000590588 FLIIQ13045 1269 aa13.92□□□□□ -0.18
ZNF540-209ENST00000590588 GADL1Q6ZQY3 521 aa13.92□□□□□ -0.18
ZNF540-209ENST00000590588 SYMPKQ92797 1274 aaKnown RBP13.92□□□□□ -0.18
ZNF540-209ENST00000590588 FAM161BQ96MY7 647 aa13.92□□□□□ -0.18
ZNF540-209ENST00000590588 RNF216Q9NWF9 866 aaPredicted RBP13.92□□□□□ -0.18
ZNF540-209ENST00000590588 OGDHLQ9ULD0 1010 aa13.92□□□□□ -0.18
ZNF540-209ENST00000590588 TCP10Q12799 353 aa13.91□□□□□ -0.18
ZNF540-209ENST00000590588 ZNF697Q5TEC3 545 aa13.91□□□□□ -0.18
ZNF540-209ENST00000590588 PICK1Q9NRD5 415 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms