RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 CDC5LQ99459 802 aaKnown RBP12.43□□□□□ -0.42
ZNF540-208ENST00000589857 NUP62CLQ9H1M0 184 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 NDUFB9Q9Y6M9 179 aa12.43□□□□□ -0.42
ZNF540-208ENST00000589857 PTPDC1A2A3K4 754 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 TMEM88BA6NKF7 163 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 CTAGE5O15320 804 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 GPAA1O43292 621 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 GNAT2P19087 354 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 ADD2P35612 726 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 SCRN1Q12765 414 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 RESTQ13127 1097 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 ALX1Q15699 326 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 CLEC4GQ6UXB4 293 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 STOX1Q6ZVD7 989 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 PNMA8AQ86V59 439 aaPredicted RBP12.42□□□□□ -0.42
ZNF540-208ENST00000589857 VGLL2Q8N8G2 317 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 CNBD1Q8NA66 436 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 NSUN7Q8NE18 718 aaKnown RBP12.42□□□□□ -0.42
ZNF540-208ENST00000589857 MASTLQ96GX5 879 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 TCEANC2Q96MN5 208 aa12.42□□□□□ -0.42
ZNF540-208ENST00000589857 NOL7Q9UMY1 257 aaKnown RBP12.42□□□□□ -0.42
ZNF540-208ENST00000589857 MYH14Q7Z406 1995 aaKnown RBP12.41□□□□□ -0.42
ZNF540-208ENST00000589857 GOLGA6L6A8MZA4 724 aa12.41□□□□□ -0.42
ZNF540-208ENST00000589857 POTECB2RU33 542 aa12.41□□□□□ -0.42
ZNF540-208ENST00000589857 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-208ENST00000589857 LEO1Q8WVC0 666 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-208ENST00000589857 CHAMP1Q96JM3 812 aa12.41□□□□□ -0.42
ZNF540-208ENST00000589857 CNNM2Q9H8M5 875 aa12.41□□□□□ -0.42
ZNF540-208ENST00000589857 RNF216Q9NWF9 866 aaPredicted RBP12.41□□□□□ -0.42
ZNF540-208ENST00000589857 TAF6LQ9Y6J9 622 aa12.41□□□□□ -0.42
ZNF540-208ENST00000589857 CPLX1O14810 134 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 PRC1O43663 620 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 DDNO94850 711 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 FGFR2P21802 821 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 PDIA3P30101 505 aaKnown RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 MAP2K1Q02750 393 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 APOBRQ0VD83 1088 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 SLC9C2Q5TAH2 1124 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 CCDC102BQ68D86 513 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 TMED8Q6PL24 325 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 BRAPQ7Z569 592 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 TTC6Q86TZ1 520 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 FERMT3Q86UX7 667 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 BICD2Q8TD16 824 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 TMEM87BQ96K49 555 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 MTA3Q9BTC8 594 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 BEGAINQ9BUH8 593 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 NACAP1Q9BZK3 213 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 TNMDQ9H2S6 317 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 BCL2L12Q9HB09 334 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 GNL3LQ9NVN8 582 aaKnown RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 ZNF219Q9P2Y4 722 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 NAP1L2Q9ULW6 460 aaPredicted RBP12.4□□□□□ -0.42
ZNF540-208ENST00000589857 CLEC11AQ9Y240 323 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 CNTNAP1P78357 1384 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 SBF1O95248 1867 aa12.4□□□□□ -0.42
ZNF540-208ENST00000589857 ANKRD36CQ5JPF3 1778 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 FGAP02671 866 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 MCAMP43121 646 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 CCDC93Q567U6 631 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 TBC1D9BQ66K14 1250 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 PRR5LQ6MZQ0 368 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 CCDC73Q6ZRK6 1079 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 MB21D2Q8IYB1 491 aaPredicted RBP12.39□□□□□ -0.43
ZNF540-208ENST00000589857 RTKN2Q8IZC4 609 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 RNF214Q8ND24 703 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 L3MBTL3Q96JM7 780 aaPredicted RBP12.39□□□□□ -0.43
ZNF540-208ENST00000589857 CCDC85AQ96PX6 553 aaPredicted RBP12.39□□□□□ -0.43
ZNF540-208ENST00000589857 CLSTN2Q9H4D0 955 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 ZKSCAN5Q9Y2L8 839 aa12.39□□□□□ -0.43
ZNF540-208ENST00000589857 UBN2Q6ZU65 1347 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 SALL1Q9NSC2 1324 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 GOLGA8BA8MQT2 603 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 FOXN1O15353 648 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 ZNF500O60304 480 aaPredicted RBP12.38□□□□□ -0.43
ZNF540-208ENST00000589857 JAK2O60674 1132 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 IGSF3O75054 1194 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 IDH1O75874 414 aaKnown RBP12.38□□□□□ -0.43
ZNF540-208ENST00000589857 CAMTA2O94983 1202 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 SRGNP10124 158 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 PDE6AP16499 860 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 KIAA2012Q0VF49 1180 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 SASS6Q6UVJ0 657 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 SPATA5Q8NB90 893 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 FAM200AQ8TCP9 573 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 DDX11Q96FC9 970 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 KRT23Q9C075 422 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 HACL1Q9UJ83 578 aa12.38□□□□□ -0.43
ZNF540-208ENST00000589857 KLF18A0A0U1RQI7 1052 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 APPP05067 770 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 ALDH1B1P30837 517 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 SCARF1Q14162 830 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 SART3Q15020 963 aaKnown RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 DEFB115Q30KQ5 88 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 EAPPQ56P03 285 aaPredicted RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 SUSD4Q5VX71 490 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 TPTE2Q6XPS3 522 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 SYNE3Q6ZMZ3 975 aa12.37□□□□□ -0.43
ZNF540-208ENST00000589857 RBM43Q6ZSC3 357 aaKnown RBP12.37□□□□□ -0.43
ZNF540-208ENST00000589857 NBPF5PQ86XG9 351 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms