RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 PCDHAC2Q9Y5I4 1007 aa18.27■□□□□ 0.52
ATG4D-211ENST00000589753 M0R2C6 588 aa18.26■□□□□ 0.51
ATG4D-211ENST00000589753 MBD4O95243 580 aa18.26■□□□□ 0.51
ATG4D-211ENST00000589753 PPP4CP60510 307 aa18.26■□□□□ 0.51
ATG4D-211ENST00000589753 DYNLL1P63167 89 aaKnown RBP18.26■□□□□ 0.51
ATG4D-211ENST00000589753 CERS3Q8IU89 383 aa18.26■□□□□ 0.51
ATG4D-211ENST00000589753 AIDAQ96BJ3 306 aa18.26■□□□□ 0.51
ATG4D-211ENST00000589753 ZBED3Q96IU2 234 aaPredicted RBP18.26■□□□□ 0.51
ATG4D-211ENST00000589753 PRMT6Q96LA8 375 aaPredicted RBP18.26■□□□□ 0.51
ATG4D-211ENST00000589753 RIOK1Q9BRS2 568 aaKnown RBP18.26■□□□□ 0.51
ATG4D-211ENST00000589753 ADARB2Q9NS39 739 aaKnown RBP18.26■□□□□ 0.51
ATG4D-211ENST00000589753 SCN4AP35499 1836 aa18.26■□□□□ 0.51
ATG4D-211ENST00000589753 RAD50Q92878 1312 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 POTECB2RU33 542 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 EGFRP00533 1210 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 PLCG2P16885 1265 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 EPHX2P34913 555 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 LCORLQ8N3X6 602 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 ARMT1Q9H993 441 aa18.25■□□□□ 0.51
ATG4D-211ENST00000589753 WNT10BO00744 389 aa18.24■□□□□ 0.51
ATG4D-211ENST00000589753 GPAA1O43292 621 aa18.24■□□□□ 0.51
ATG4D-211ENST00000589753 MYO1BO43795 1136 aa18.24■□□□□ 0.51
ATG4D-211ENST00000589753 MFAP1P55081 439 aaKnown RBP18.24■□□□□ 0.51
ATG4D-211ENST00000589753 CCDC129Q6ZRS4 1044 aa18.24■□□□□ 0.51
ATG4D-211ENST00000589753 TRPM4Q8TD43 1214 aa18.24■□□□□ 0.51
ATG4D-211ENST00000589753 USP40Q9NVE5 1235 aa18.24■□□□□ 0.51
ATG4D-211ENST00000589753 SGSM2O43147 1006 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 RHBDL3P58872 404 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 NBPF9Q3BBW0 867 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 CDC42EP5Q6NZY7 148 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 USP50Q70EL3 339 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 ZNF589Q86UQ0 364 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 SH3RF3Q8TEJ3 882 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 ZNF526Q8TF50 670 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 STRBPQ96SI9 672 aaKnown RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 ESYT1Q9BSJ8 1104 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 TAF1DQ9H5J8 278 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 TDRD3Q9H7E2 651 aaKnown RBP18.23■□□□□ 0.51
ATG4D-211ENST00000589753 RRAGCQ9HB90 399 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 CCDC171Q6TFL3 1326 aa18.23■□□□□ 0.51
ATG4D-211ENST00000589753 VEGFAP15692 232 aaPredicted RBP18.22■□□□□ 0.51
ATG4D-211ENST00000589753 HIRAP54198 1017 aaPredicted RBP18.22■□□□□ 0.51
ATG4D-211ENST00000589753 TEX11Q8IYF3 940 aa18.22■□□□□ 0.51
ATG4D-211ENST00000589753 CRNKL1Q9BZJ0 848 aaKnown RBP18.22■□□□□ 0.51
ATG4D-211ENST00000589753 IL25Q9H293 177 aa18.22■□□□□ 0.51
ATG4D-211ENST00000589753 TMOD2Q9NZR1 351 aa18.22■□□□□ 0.51
ATG4D-211ENST00000589753 CLRN2A0PK11 232 aa18.21■□□□□ 0.51
ATG4D-211ENST00000589753 GNAT2P19087 354 aa18.21■□□□□ 0.51
ATG4D-211ENST00000589753 SPDYE2Q495Y8 402 aa18.21■□□□□ 0.51
ATG4D-211ENST00000589753 PNMA8AQ86V59 439 aaPredicted RBP18.21■□□□□ 0.51
ATG4D-211ENST00000589753 ZNF70Q9UC06 446 aaPredicted RBP18.21■□□□□ 0.51
ATG4D-211ENST00000589753 SLC4A4Q9Y6R1 1079 aa18.21■□□□□ 0.51
ATG4D-211ENST00000589753 NMRK2Q9NPI5 230 aa18.2■□□□□ 0.5
ATG4D-211ENST00000589753 ECM29Q5VYK3 1845 aa18.2■□□□□ 0.5
ATG4D-211ENST00000589753 PRKAB2O43741 272 aa18.19■□□□□ 0.5
ATG4D-211ENST00000589753 WDHD1O75717 1129 aaPredicted RBP18.19■□□□□ 0.5
ATG4D-211ENST00000589753 USP5P45974 858 aa18.19■□□□□ 0.5
ATG4D-211ENST00000589753 CACNB3P54284 484 aa18.19■□□□□ 0.5
ATG4D-211ENST00000589753 C8orf34Q49A92 452 aa18.19■□□□□ 0.5
ATG4D-211ENST00000589753 EAPPQ56P03 285 aaPredicted RBP18.19■□□□□ 0.5
ATG4D-211ENST00000589753 TGFBRAP1Q8WUH2 860 aa18.19■□□□□ 0.5
ATG4D-211ENST00000589753 VEZTQ9HBM0 779 aa18.19■□□□□ 0.5
ATG4D-211ENST00000589753 ASTN2O75129 1339 aaPredicted RBP18.19■□□□□ 0.5
ATG4D-211ENST00000589753 RPAP1Q9BWH6 1393 aaPredicted RBP18.18■□□□□ 0.5
ATG4D-211ENST00000589753 PATL2C9JE40 543 aaKnown RBP18.18■□□□□ 0.5
ATG4D-211ENST00000589753 ANGEL2Q5VTE6 544 aaKnown RBP18.18■□□□□ 0.5
ATG4D-211ENST00000589753 KIAA1211Q6ZU35 1233 aa18.18■□□□□ 0.5
ATG4D-211ENST00000589753 SDR42E1Q8WUS8 393 aa18.18■□□□□ 0.5
ATG4D-211ENST00000589753 IDI2Q9BXS1 227 aa18.18■□□□□ 0.5
ATG4D-211ENST00000589753 GSG1L2A8MUP6 293 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 TCP10L2B9ZVM9 353 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 APPP05067 770 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 HSPD1P10809 573 aaKnown RBP18.17■□□□□ 0.5
ATG4D-211ENST00000589753 NFIAQ12857 509 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 PICALMQ13492 652 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 VPS53Q5VIR6 699 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 FKBP1CQ5VVH2 108 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 MAPKAPK5Q8IW41 473 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 ZC3H15Q8WU90 426 aaKnown RBP18.17■□□□□ 0.5
ATG4D-211ENST00000589753 DDRGK1Q96HY6 314 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 GPBP1L1Q9HC44 474 aaPredicted RBP18.17■□□□□ 0.5
ATG4D-211ENST00000589753 ANO2Q9NQ90 1003 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 ATP8A2Q9NTI2 1148 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 GGA3Q9NZ52 723 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 FLT1P17948 1338 aa18.17■□□□□ 0.5
ATG4D-211ENST00000589753 CDK5RAP2Q96SN8 1893 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 EIF5BO60841 1220 aaKnown RBP18.16■□□□□ 0.5
ATG4D-211ENST00000589753 NPM3O75607 178 aaKnown RBP18.16■□□□□ 0.5
ATG4D-211ENST00000589753 YY1P25490 414 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 TNFAIP1Q13829 316 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 GIMAP6Q6P9H5 292 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 APOBEC3FQ8IUX4 373 aaKnown RBP18.16■□□□□ 0.5
ATG4D-211ENST00000589753 DCPSQ96C86 337 aaKnown RBP18.16■□□□□ 0.5
ATG4D-211ENST00000589753 DSCC1Q9BVC3 393 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 NACAP1Q9BZK3 213 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 DCP1AQ9NPI6 582 aaPredicted RBP18.16■□□□□ 0.5
ATG4D-211ENST00000589753 DDX4Q9NQI0 724 aaKnown RBP18.16■□□□□ 0.5
ATG4D-211ENST00000589753 FAM198AQ9UFP1 575 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 PITPNM2Q9BZ72 1349 aa18.16■□□□□ 0.5
ATG4D-211ENST00000589753 FOCADQ5VW36 1801 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms