RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 ZNF423Q2M1K9 1284 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 C2orf27AQ580R0 203 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 STK35Q8TDR2 534 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 THAP3Q8WTV1 239 aaPredicted RBP10.66□□□□□ -0.7
VMP1-208ENST00000588617 FEZ1Q99689 392 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 EMILIN2Q9BXX0 1053 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 EHMT1Q9H9B1 1298 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 PFDN2Q9UHV9 154 aa10.66□□□□□ -0.7
VMP1-208ENST00000588617 B3GALT4O96024 378 aa10.65□□□□□ -0.7
VMP1-208ENST00000588617 EIF2AK2P19525 551 aaKnown RBP10.65□□□□□ -0.7
VMP1-208ENST00000588617 TBC1D8BQ0IIM8 1120 aa10.65□□□□□ -0.7
VMP1-208ENST00000588617 DBN1Q16643 649 aa10.65□□□□□ -0.7
VMP1-208ENST00000588617 RUFY4Q6ZNE9 571 aa10.65□□□□□ -0.7
VMP1-208ENST00000588617 DDX56Q9NY93 547 aaKnown RBP10.65□□□□□ -0.7
VMP1-208ENST00000588617 GRIN3BO60391 1043 aa10.64□□□□□ -0.71
VMP1-208ENST00000588617 MASP1P48740 699 aa10.64□□□□□ -0.71
VMP1-208ENST00000588617 RPL6Q02878 288 aaKnown RBP10.64□□□□□ -0.71
VMP1-208ENST00000588617 PCSK7Q16549 785 aa10.64□□□□□ -0.71
VMP1-208ENST00000588617 PLEKHG6Q3KR16 790 aa10.64□□□□□ -0.71
VMP1-208ENST00000588617 GAL3ST3Q96A11 431 aa10.64□□□□□ -0.71
VMP1-208ENST00000588617 PARNO95453 639 aaKnown RBP10.63□□□□□ -0.71
VMP1-208ENST00000588617 TKFCQ3LXA3 575 aa10.63□□□□□ -0.71
VMP1-208ENST00000588617 MICALL1Q8N3F8 863 aa10.63□□□□□ -0.71
VMP1-208ENST00000588617 UBE2OQ9C0C9 1292 aaKnown RBP10.63□□□□□ -0.71
VMP1-208ENST00000588617 DNAJB12Q9NXW2 375 aaKnown RBP10.63□□□□□ -0.71
VMP1-208ENST00000588617 POLR3KQ9Y2Y1 108 aaPredicted RBP10.63□□□□□ -0.71
VMP1-208ENST00000588617 B2RBV5 119 aa10.62□□□□□ -0.71
VMP1-208ENST00000588617 DIAPH1O60610 1272 aaKnown RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 SNRPBP14678 240 aaKnown RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 PTPN11Q06124 597 aaPredicted RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 SSRP1Q08945 709 aaKnown RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 TCEA2Q15560 299 aa10.62□□□□□ -0.71
VMP1-208ENST00000588617 C6orf15Q6UXA7 325 aaPredicted RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 SPATC1Q76KD6 591 aa10.62□□□□□ -0.71
VMP1-208ENST00000588617 C19orf47Q8N9M1 422 aaKnown RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 TRIM47Q96LD4 638 aa10.62□□□□□ -0.71
VMP1-208ENST00000588617 IRF2BPLQ9H1B7 796 aa10.62□□□□□ -0.71
VMP1-208ENST00000588617 ATXN7L1Q9ULK2 861 aaPredicted RBP10.62□□□□□ -0.71
VMP1-208ENST00000588617 PRR12Q9ULL5 1215 aa10.62□□□□□ -0.71
VMP1-208ENST00000588617 A0A1W2PQH9 124 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 SLC35F4A4IF30 521 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 ATE1O95260 518 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 PTPRAP18433 802 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 PTSQ03393 145 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 LCE2AQ5TA79 106 aaPredicted RBP10.61□□□□□ -0.71
VMP1-208ENST00000588617 CCDC181Q5TID7 509 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 VN1R5Q7Z5H4 357 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 FAM178BQ8IXR5 827 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 TRIM22Q8IYM9 498 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 SOX13Q9UN79 622 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 PTCH2Q9Y6C5 1203 aa10.61□□□□□ -0.71
VMP1-208ENST00000588617 ASMTLO95671 621 aa10.6□□□□□ -0.71
VMP1-208ENST00000588617 HCLS1P14317 486 aaPredicted RBP10.6□□□□□ -0.71
VMP1-208ENST00000588617 FAM182BQ5T319 152 aa10.6□□□□□ -0.71
VMP1-208ENST00000588617 TTC6Q86TZ1 520 aa10.6□□□□□ -0.71
VMP1-208ENST00000588617 JMYQ8N9B5 988 aa10.6□□□□□ -0.71
VMP1-208ENST00000588617 DDX54Q8TDD1 881 aaKnown RBP10.6□□□□□ -0.71
VMP1-208ENST00000588617 ANTXR1Q9H6X2 564 aa10.6□□□□□ -0.71
VMP1-208ENST00000588617 ZMYM5Q9UJ78 669 aa10.6□□□□□ -0.71
VMP1-208ENST00000588617 SOBPA7XYQ1 873 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 S100BP04271 92 aaPredicted RBP10.59□□□□□ -0.71
VMP1-208ENST00000588617 FGFR3P22607 806 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 ZNF252P-AS1Q0IIN9 211 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 LRRFIP1Q32MZ4 808 aaKnown RBP10.59□□□□□ -0.71
VMP1-208ENST00000588617 MPRIPQ6WCQ1 1025 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 ST13P5Q8NFI4 369 aaPredicted RBP10.59□□□□□ -0.71
VMP1-208ENST00000588617 STAG1Q8WVM7 1258 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 LACRTQ9GZZ8 138 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 SENP2Q9HC62 589 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 G3BP2Q9UN86 482 aaKnown RBP10.59□□□□□ -0.71
VMP1-208ENST00000588617 PHF24Q9UPV7 400 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 PPME1Q9Y570 386 aa10.59□□□□□ -0.71
VMP1-208ENST00000588617 FAM177BA6PVY3 158 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 ESRRAP11474 423 aaPredicted RBP10.58□□□□□ -0.72
VMP1-208ENST00000588617 CPB1P15086 417 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 MAP1SQ66K74 1059 aaPredicted RBP10.58□□□□□ -0.72
VMP1-208ENST00000588617 SCARA3Q6AZY7 606 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 ADAMTSL4Q6UY14 1074 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.58□□□□□ -0.72
VMP1-208ENST00000588617 FAM35AQ86V20 835 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 ZSCAN1Q8NBB4 408 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 GTPBP3Q969Y2 492 aaKnown RBP10.58□□□□□ -0.72
VMP1-208ENST00000588617 TM9SF2Q99805 663 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 CHPF2Q9P2E5 772 aa10.58□□□□□ -0.72
VMP1-208ENST00000588617 GUCY2CP25092 1073 aa10.57□□□□□ -0.72
VMP1-208ENST00000588617 TREML4Q6UXN2 200 aa10.57□□□□□ -0.72
VMP1-208ENST00000588617 SYT9Q86SS6 491 aa10.57□□□□□ -0.72
VMP1-208ENST00000588617 SYNPOQ8N3V7 929 aa10.57□□□□□ -0.72
VMP1-208ENST00000588617 ADAM19Q9H013 955 aa10.57□□□□□ -0.72
VMP1-208ENST00000588617 CTBSQ01459 385 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 IKBKEQ14164 716 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 C21orf62-AS1Q17RA5 79 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 PDZD3Q86UT5 571 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 CCDC155Q8N6L0 562 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 ZNF837Q96EG3 531 aaPredicted RBP10.56□□□□□ -0.72
VMP1-208ENST00000588617 GMCL1Q96IK5 515 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 TRERF1Q96PN7 1200 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 SH2B1Q9NRF2 756 aaPredicted RBP10.56□□□□□ -0.72
VMP1-208ENST00000588617 CD2APQ9Y5K6 639 aa10.56□□□□□ -0.72
VMP1-208ENST00000588617 PDGFRBP09619 1106 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms