RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 MIGA2Q7L4E1 593 aa17.8■□□□□ 0.44
VMP1-206ENST00000587945 ZKSCAN4Q969J2 545 aaPredicted RBP17.8■□□□□ 0.44
VMP1-206ENST00000587945 SNCAIPQ9Y6H5 919 aa17.8■□□□□ 0.44
VMP1-206ENST00000587945 CCL15-CCL14A0A0B4J2E2 113 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 A0A1B0GUL7 405 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 HNRNPUQ00839 825 aaKnown RBP eCLIP17.79■□□□□ 0.44
VMP1-206ENST00000587945 MTX1Q13505 466 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 RASGRF1Q13972 1273 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 CCL15Q16663 113 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 FBXO46Q6PJ61 603 aaPredicted RBP17.79■□□□□ 0.44
VMP1-206ENST00000587945 XAGE2Q96GT9 111 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 USP40Q9NVE5 1235 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 TRIM17Q9Y577 477 aa17.79■□□□□ 0.44
VMP1-206ENST00000587945 SALL1Q9NSC2 1324 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 SPDYE5A6NIY4 337 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 SEMA3EO15041 775 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 GNAI2P04899 355 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 GTF2A2P52657 109 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 TMEM57Q8N5G2 664 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 CD99L2Q8TCZ2 262 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 FAM151AQ8WW52 585 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 FAM198AQ9UFP1 575 aa17.78■□□□□ 0.44
VMP1-206ENST00000587945 PNMA6EA0A0J9YXQ4 647 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 DCAF15Q66K64 600 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 OTOP1Q7RTM1 612 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 ZFPM1Q8IX07 1006 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 FAM43AQ8N2R8 423 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 HOOK2Q96ED9 719 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 ABCF2Q9UG63 623 aa17.77■□□□□ 0.44
VMP1-206ENST00000587945 INPP5BP32019 993 aa17.76■□□□□ 0.43
VMP1-206ENST00000587945 CAP1Q01518 475 aa17.76■□□□□ 0.43
VMP1-206ENST00000587945 ERO1BQ86YB8 467 aa17.76■□□□□ 0.43
VMP1-206ENST00000587945 NEUROD6Q96NK8 337 aa17.76■□□□□ 0.43
VMP1-206ENST00000587945 ZNF341Q9BYN7 854 aa17.76■□□□□ 0.43
VMP1-206ENST00000587945 AKAP2Q9Y2D5 859 aa17.76■□□□□ 0.43
VMP1-206ENST00000587945 RPAP1Q9BWH6 1393 aaPredicted RBP17.76■□□□□ 0.43
VMP1-206ENST00000587945 IRF6O14896 467 aa17.75■□□□□ 0.43
VMP1-206ENST00000587945 ZKSCAN2Q63HK3 967 aa17.75■□□□□ 0.43
VMP1-206ENST00000587945 DIEXFQ68CQ4 756 aaKnown RBP17.75■□□□□ 0.43
VMP1-206ENST00000587945 ZGPATQ8N5A5 531 aaKnown RBP17.75■□□□□ 0.43
VMP1-206ENST00000587945 ZBTB22O15209 634 aa17.74■□□□□ 0.43
VMP1-206ENST00000587945 SP3Q02447 781 aa17.74■□□□□ 0.43
VMP1-206ENST00000587945 MVPQ14764 893 aaKnown RBP17.74■□□□□ 0.43
VMP1-206ENST00000587945 TAF1CQ15572 869 aaPredicted RBP17.74■□□□□ 0.43
VMP1-206ENST00000587945 DZIP1Q86YF9 867 aaKnown RBP17.74■□□□□ 0.43
VMP1-206ENST00000587945 ERO1AQ96HE7 468 aa17.74■□□□□ 0.43
VMP1-206ENST00000587945 GAKO14976 1311 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 OTOFQ9HC10 1997 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 BTBD19C9JJ37 291 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 CETPP11597 493 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 G3BP1Q13283 466 aaKnown RBP eCLIP17.73■□□□□ 0.43
VMP1-206ENST00000587945 PPIL2Q13356 520 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 SNAPC2Q13487 334 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 PI16Q6UXB8 463 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 EFCC1Q9HA90 598 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 ZFYVE28Q9HCC9 887 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 ZNF112Q9UJU3 913 aa17.73■□□□□ 0.43
VMP1-206ENST00000587945 RGS3P49796 1198 aa17.72■□□□□ 0.43
VMP1-206ENST00000587945 GORABQ5T7V8 394 aa17.72■□□□□ 0.43
VMP1-206ENST00000587945 C1orf115Q9H7X2 142 aa17.72■□□□□ 0.43
VMP1-206ENST00000587945 HMG20BQ9P0W2 317 aa17.72■□□□□ 0.43
VMP1-206ENST00000587945 PDS5AQ29RF7 1337 aaKnown RBP17.72■□□□□ 0.43
VMP1-206ENST00000587945 SLURP2P0DP57 97 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 BTDP43251 543 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 MECOMQ03112 1051 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 SPTY2D1Q68D10 685 aaPredicted RBP17.71■□□□□ 0.43
VMP1-206ENST00000587945 TBC1D9Q6ZT07 1266 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 ERICH6Q7L0X2 663 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 SH3BP5LQ7L8J4 393 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.71■□□□□ 0.43
VMP1-206ENST00000587945 ZNF384Q8TF68 577 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 PTPN22Q9Y2R2 807 aa17.71■□□□□ 0.43
VMP1-206ENST00000587945 WDHD1O75717 1129 aaPredicted RBP17.7■□□□□ 0.42
VMP1-206ENST00000587945 RLBP1P12271 317 aa17.7■□□□□ 0.42
VMP1-206ENST00000587945 PPATQ06203 517 aa17.7■□□□□ 0.42
VMP1-206ENST00000587945 SPATA5Q8NB90 893 aa17.7■□□□□ 0.42
VMP1-206ENST00000587945 FAM163AQ96GL9 167 aaPredicted RBP17.7■□□□□ 0.42
VMP1-206ENST00000587945 IDI2Q9BXS1 227 aa17.7■□□□□ 0.42
VMP1-206ENST00000587945 DDX4Q9NQI0 724 aaKnown RBP17.7■□□□□ 0.42
VMP1-206ENST00000587945 MROH7-TTC4A0A0A0MT08 1334 aa17.7■□□□□ 0.42
VMP1-206ENST00000587945 ENTPD3O75355 529 aa17.69■□□□□ 0.42
VMP1-206ENST00000587945 PICALMQ13492 652 aa17.69■□□□□ 0.42
VMP1-206ENST00000587945 POLA2Q14181 598 aa17.69■□□□□ 0.42
VMP1-206ENST00000587945 ZSCAN29Q8IWY8 852 aaPredicted RBP17.69■□□□□ 0.42
VMP1-206ENST00000587945 SLF2Q8IX21 1173 aa17.69■□□□□ 0.42
VMP1-206ENST00000587945 FTSJ3Q8IY81 847 aaKnown RBP17.69■□□□□ 0.42
VMP1-206ENST00000587945 RFX7Q2KHR2 1363 aa17.68■□□□□ 0.42
VMP1-206ENST00000587945 ATRNL1Q5VV63 1379 aa17.68■□□□□ 0.42
VMP1-206ENST00000587945 DDTLA6NHG4 134 aaPredicted RBP17.68■□□□□ 0.42
VMP1-206ENST00000587945 ARID4AP29374 1257 aaPredicted RBP17.68■□□□□ 0.42
VMP1-206ENST00000587945 MCAMP43121 646 aa17.68■□□□□ 0.42
VMP1-206ENST00000587945 ATP8B2P98198 1209 aa17.68■□□□□ 0.42
VMP1-206ENST00000587945 NOL9Q5SY16 702 aaKnown RBP17.68■□□□□ 0.42
VMP1-206ENST00000587945 ITPRIPQ8IWB1 547 aa17.68■□□□□ 0.42
VMP1-206ENST00000587945 GPR75-ASB3A0A0A6YYF3 556 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 PHF20L1A8MW92 1017 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 TLR2O60603 784 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 ECM2O94769 699 aaPredicted RBP17.67■□□□□ 0.42
VMP1-206ENST00000587945 RHBDL3P58872 404 aa17.67■□□□□ 0.42
VMP1-206ENST00000587945 OS9Q13438 667 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms