RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 FGFR2P21802 821 aa27.43■■□□□ 1.98
SHMT1-210ENST00000583780 INPP5BP32019 993 aa27.43■■□□□ 1.98
SHMT1-210ENST00000583780 PRMT2P55345 433 aa27.43■■□□□ 1.98
SHMT1-210ENST00000583780 MTFR1Q15390 333 aa27.43■■□□□ 1.98
SHMT1-210ENST00000583780 HOOK2Q96ED9 719 aa27.42■■□□□ 1.98
SHMT1-210ENST00000583780 ZNF341Q9BYN7 854 aa27.42■■□□□ 1.98
SHMT1-210ENST00000583780 TMOD2Q9NZR1 351 aa27.42■■□□□ 1.98
SHMT1-210ENST00000583780 CPA4Q9UI42 421 aa27.42■■□□□ 1.98
SHMT1-210ENST00000583780 ZNF112Q9UJU3 913 aa27.42■■□□□ 1.98
SHMT1-210ENST00000583780 AK9Q5TCS8 1911 aa27.41■■□□□ 1.98
SHMT1-210ENST00000583780 ECM2O94769 699 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-210ENST00000583780 MOGSQ13724 837 aa27.41■■□□□ 1.98
SHMT1-210ENST00000583780 DCAF15Q66K64 600 aa27.41■■□□□ 1.98
SHMT1-210ENST00000583780 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-210ENST00000583780 SHISA4Q96DD7 197 aa27.41■■□□□ 1.98
SHMT1-210ENST00000583780 RPAP1Q9BWH6 1393 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-210ENST00000583780 ANKRD23Q86SG2 305 aa27.4■■□□□ 1.98
SHMT1-210ENST00000583780 TRIM47Q96LD4 638 aa27.4■■□□□ 1.98
SHMT1-210ENST00000583780 SRRDQ9UH36 339 aa27.4■■□□□ 1.98
SHMT1-210ENST00000583780 ADGRA2Q96PE1 1338 aa27.4■■□□□ 1.98
SHMT1-210ENST00000583780 SZT2Q5T011 3432 aa27.39■■□□□ 1.98
SHMT1-210ENST00000583780 PSMC4P43686 418 aa27.39■■□□□ 1.98
SHMT1-210ENST00000583780 FAM151AQ8WW52 585 aa27.39■■□□□ 1.98
SHMT1-210ENST00000583780 KCNH4Q9UQ05 1017 aa27.39■■□□□ 1.98
SHMT1-210ENST00000583780 MAST3O60307 1309 aa27.39■■□□□ 1.97
SHMT1-210ENST00000583780 KIF16BQ96L93 1317 aa27.39■■□□□ 1.97
SHMT1-210ENST00000583780 PDHXO00330 501 aa27.38■■□□□ 1.97
SHMT1-210ENST00000583780 MRPL50Q8N5N7 158 aaKnown RBP27.38■■□□□ 1.97
SHMT1-210ENST00000583780 USP44Q9H0E7 712 aa27.38■■□□□ 1.97
SHMT1-210ENST00000583780 OSBPP22059 807 aa27.37■■□□□ 1.97
SHMT1-210ENST00000583780 MYH13Q9UKX3 1938 aa27.37■■□□□ 1.97
SHMT1-210ENST00000583780 IFIT1P09914 478 aaKnown RBP27.36■■□□□ 1.97
SHMT1-210ENST00000583780 RFX5P48382 616 aaPredicted RBP27.36■■□□□ 1.97
SHMT1-210ENST00000583780 PUM3Q15397 648 aaKnown RBP27.36■■□□□ 1.97
SHMT1-210ENST00000583780 CDC42EP5Q6NZY7 148 aa27.36■■□□□ 1.97
SHMT1-210ENST00000583780 TCP10Q12799 353 aa27.35■■□□□ 1.97
SHMT1-210ENST00000583780 NFIAQ12857 509 aa27.35■■□□□ 1.97
SHMT1-210ENST00000583780 UBE2Q1Q7Z7E8 422 aa27.35■■□□□ 1.97
SHMT1-210ENST00000583780 WDR66Q8TBY9 1149 aa27.35■■□□□ 1.97
SHMT1-210ENST00000583780 HOXD10P28358 340 aa27.34■■□□□ 1.97
SHMT1-210ENST00000583780 GRK4P32298 578 aa27.34■■□□□ 1.97
SHMT1-210ENST00000583780 GPAT2Q6NUI2 795 aa27.34■■□□□ 1.97
SHMT1-210ENST00000583780 FAM198AQ9UFP1 575 aa27.34■■□□□ 1.97
SHMT1-210ENST00000583780 DAGLAQ9Y4D2 1042 aa27.34■■□□□ 1.97
SHMT1-210ENST00000583780 MGAMO43451 1857 aa27.34■■□□□ 1.97
SHMT1-210ENST00000583780 DIXDC1Q155Q3 683 aa27.33■■□□□ 1.97
SHMT1-210ENST00000583780 NOL9Q5SY16 702 aaKnown RBP27.33■■□□□ 1.97
SHMT1-210ENST00000583780 EYA2O00167 538 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 FMNL1O95466 1100 aaPredicted RBP27.32■■□□□ 1.96
SHMT1-210ENST00000583780 BCRP11274 1271 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 GJA8P48165 433 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 CHRDL2Q6WN34 429 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 ATG9AQ7Z3C6 839 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 ZFPM1Q8IX07 1006 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 LPIN2Q92539 896 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 DPF3Q92784 378 aa27.32■■□□□ 1.96
SHMT1-210ENST00000583780 RANBP2P49792 3224 aaKnown RBP27.31■■□□□ 1.96
SHMT1-210ENST00000583780 ANP32CO43423 234 aa27.31■■□□□ 1.96
SHMT1-210ENST00000583780 GJB1P08034 283 aa27.31■■□□□ 1.96
SHMT1-210ENST00000583780 RAET1EQ8TD07 263 aa27.31■■□□□ 1.96
SHMT1-210ENST00000583780 RBM27Q9P2N5 1060 aaKnown RBP27.31■■□□□ 1.96
SHMT1-210ENST00000583780 ZNF521Q96K83 1311 aa27.31■■□□□ 1.96
SHMT1-210ENST00000583780 CCL5P13501 91 aa27.3■■□□□ 1.96
SHMT1-210ENST00000583780 PRDX5P30044 214 aa27.3■■□□□ 1.96
SHMT1-210ENST00000583780 MYPNQ86TC9 1320 aa27.3■■□□□ 1.96
SHMT1-210ENST00000583780 CYP2C8P10632 490 aa27.29■■□□□ 1.96
SHMT1-210ENST00000583780 SLC5A1P13866 664 aa27.29■■□□□ 1.96
SHMT1-210ENST00000583780 NKX2-3Q8TAU0 364 aa27.29■■□□□ 1.96
SHMT1-210ENST00000583780 USP40Q9NVE5 1235 aa27.29■■□□□ 1.96
SHMT1-210ENST00000583780 DOCK3Q8IZD9 2030 aa27.28■■□□□ 1.96
SHMT1-210ENST00000583780 PTPRCP08575 1304 aa27.28■■□□□ 1.96
SHMT1-210ENST00000583780 PHF20L1A8MW92 1017 aa27.28■■□□□ 1.96
SHMT1-210ENST00000583780 CXCL11O14625 94 aa27.28■■□□□ 1.96
SHMT1-210ENST00000583780 PRO3102Q9H379 93 aa27.28■■□□□ 1.96
SHMT1-210ENST00000583780 GABRQQ9UN88 632 aa27.28■■□□□ 1.96
SHMT1-210ENST00000583780 PRKCZQ05513 592 aa27.27■■□□□ 1.96
SHMT1-210ENST00000583780 RNF208Q9H0X6 261 aa27.27■■□□□ 1.96
SHMT1-210ENST00000583780 ATRNL1Q5VV63 1379 aa27.26■■□□□ 1.95
SHMT1-210ENST00000583780 FAM9BQ8IZU0 186 aa27.26■■□□□ 1.95
SHMT1-210ENST00000583780 SSH1Q8WYL5 1049 aa27.26■■□□□ 1.95
SHMT1-210ENST00000583780 MYH2Q9UKX2 1941 aa27.26■■□□□ 1.95
SHMT1-210ENST00000583780 FCGRTP55899 365 aa27.24■■□□□ 1.95
SHMT1-210ENST00000583780 MAP3K10Q02779 954 aa27.24■■□□□ 1.95
SHMT1-210ENST00000583780 PARK7Q99497 189 aaKnown RBP27.24■■□□□ 1.95
SHMT1-210ENST00000583780 ZHX2Q9Y6X8 837 aa27.24■■□□□ 1.95
SHMT1-210ENST00000583780 PTPRFP10586 1907 aa27.24■■□□□ 1.95
SHMT1-210ENST00000583780 SALL1Q9NSC2 1324 aa27.23■■□□□ 1.95
SHMT1-210ENST00000583780 LDHBP07195 334 aaKnown RBP27.23■■□□□ 1.95
SHMT1-210ENST00000583780 SLURP2P0DP57 97 aa27.23■■□□□ 1.95
SHMT1-210ENST00000583780 SH3BP5LQ7L8J4 393 aa27.23■■□□□ 1.95
SHMT1-210ENST00000583780 U2AF1L4Q8WU68 220 aaKnown RBP27.23■■□□□ 1.95
SHMT1-210ENST00000583780 UNC93B1Q9H1C4 597 aa27.23■■□□□ 1.95
SHMT1-210ENST00000583780 BIN2Q9UBW5 565 aaPredicted RBP27.23■■□□□ 1.95
SHMT1-210ENST00000583780 AFG3L2Q9Y4W6 797 aa27.23■■□□□ 1.95
SHMT1-210ENST00000583780 A0A0G2JLL6 359 aaPredicted RBP27.22■■□□□ 1.95
SHMT1-210ENST00000583780 SGPL1O95470 568 aa27.22■■□□□ 1.95
SHMT1-210ENST00000583780 PTPRAP18433 802 aa27.22■■□□□ 1.95
SHMT1-210ENST00000583780 UBXN2AP68543 259 aa27.22■■□□□ 1.95
SHMT1-210ENST00000583780 PRRT2Q7Z6L0 340 aaPredicted RBP27.22■■□□□ 1.95
SHMT1-210ENST00000583780 HTATIP2Q9BUP3 242 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms