RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 GAKO14976 1311 aa17.97■□□□□ 0.47
SMARCE1-216ENST00000580419 PHKA1P46020 1223 aa17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 MKRN3Q13064 507 aaKnown RBP17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 ZKSCAN2Q63HK3 967 aa17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 SPTY2D1Q68D10 685 aaPredicted RBP17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 ERO1BQ86YB8 467 aa17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 GPR108Q9NPR9 543 aa17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 ZNF112Q9UJU3 913 aa17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 PA2G4Q9UQ80 394 aaKnown RBP17.96■□□□□ 0.47
SMARCE1-216ENST00000580419 NPM3O75607 178 aaKnown RBP17.95■□□□□ 0.46
SMARCE1-216ENST00000580419 PRDX5P30044 214 aa17.95■□□□□ 0.46
SMARCE1-216ENST00000580419 IDI2Q9BXS1 227 aa17.95■□□□□ 0.46
SMARCE1-216ENST00000580419 HPS5Q9UPZ3 1129 aa17.95■□□□□ 0.46
SMARCE1-216ENST00000580419 AK9Q5TCS8 1911 aa17.95■□□□□ 0.46
SMARCE1-216ENST00000580419 A0A1B0GUL7 405 aa17.94■□□□□ 0.46
SMARCE1-216ENST00000580419 CDC42EP5Q6NZY7 148 aa17.94■□□□□ 0.46
SMARCE1-216ENST00000580419 CDAN1Q8IWY9 1227 aa17.94■□□□□ 0.46
SMARCE1-216ENST00000580419 ERO1AQ96HE7 468 aa17.94■□□□□ 0.46
SMARCE1-216ENST00000580419 PTPN18Q99952 460 aa17.94■□□□□ 0.46
SMARCE1-216ENST00000580419 ZNF341Q9BYN7 854 aa17.94■□□□□ 0.46
SMARCE1-216ENST00000580419 CENPFP49454 3210 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 KIAA0100Q14667 2235 aaKnown RBP17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 ENTPD3O75355 529 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 BCAR3O75815 825 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 MAP3K10Q02779 954 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 PPATQ06203 517 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 PPIL2Q13356 520 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 RASGRF1Q13972 1273 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 NOL9Q5SY16 702 aaKnown RBP17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 XAGE2Q96GT9 111 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 R3HDMLQ9H3Y0 253 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 ELP3Q9H9T3 547 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 SNCAIPQ9Y6H5 919 aa17.93■□□□□ 0.46
SMARCE1-216ENST00000580419 RFX7Q2KHR2 1363 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 WDHD1O75717 1129 aaPredicted RBP17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 CETPP11597 493 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 TIMM10P62072 90 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 CRHR2Q13324 411 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 POLA2Q14181 598 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 ARHGEF6Q15052 776 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 SSH3Q8TE77 659 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 WRNIP1Q96S55 665 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 ZBED9Q6R2W3 1325 aa17.92■□□□□ 0.46
SMARCE1-216ENST00000580419 ARID4AP29374 1257 aaPredicted RBP17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 CACNB3P54284 484 aa17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 TFCP2Q12800 502 aa17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 SNAPC2Q13487 334 aa17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 DIXDC1Q155Q3 683 aa17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 DIEXFQ68CQ4 756 aaKnown RBP17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 BRI3BPQ8WY22 251 aa17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 FAM198AQ9UFP1 575 aa17.91■□□□□ 0.46
SMARCE1-216ENST00000580419 COL2A1P02458 1487 aaPredicted RBP17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 ADORA1P30542 326 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 HNRNPUQ00839 825 aaKnown RBP eCLIP17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 SP3Q02447 781 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 G3BP1Q13283 466 aaKnown RBP eCLIP17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 FRAT1Q92837 279 aaPredicted RBP17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 ZNF512BQ96KM6 892 aaPredicted RBP17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 ZFYVE28Q9HCC9 887 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 USP40Q9NVE5 1235 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 KCNH4Q9UQ05 1017 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 DOCK2Q92608 1830 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 ATRNL1Q5VV63 1379 aa17.9■□□□□ 0.46
SMARCE1-216ENST00000580419 GPR75-ASB3A0A0A6YYF3 556 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 CCL15-CCL14A0A0B4J2E2 113 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 PNMA6EA0A0J9YXQ4 647 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 UQCRFS1P1P0C7P4 283 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 ATP8B2P98198 1209 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 CCL15Q16663 113 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 OTOP1Q7RTM1 612 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 MIER1Q8N108 512 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 TMEM57Q8N5G2 664 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 OTUD5Q96G74 571 aa17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 NOP58Q9Y2X3 529 aaKnown RBP17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 RBBP6Q7Z6E9 1792 aaKnown RBP17.89■□□□□ 0.45
SMARCE1-216ENST00000580419 IRF6O14896 467 aa17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 GNRH1P01148 92 aa17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 LDHCP07864 332 aa17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 GSTO1P78417 241 aa17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 NFIAQ12857 509 aa17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 TMED8Q6PL24 325 aaPredicted RBP17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 DZIP1Q86YF9 867 aaKnown RBP17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 MROH7-TTC4A0A0A0MT08 1334 aa17.88■□□□□ 0.45
SMARCE1-216ENST00000580419 CXCL11O14625 94 aa17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 ZBTB7BO15156 539 aaPredicted RBP17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 TBC1D12O60347 775 aa17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 TLR2O60603 784 aa17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 ERICH6Q7L0X2 663 aa17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 SPATA5Q8NB90 893 aa17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 ZKSCAN4Q969J2 545 aaPredicted RBP17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 HMG20BQ9P0W2 317 aa17.87■□□□□ 0.45
SMARCE1-216ENST00000580419 TAF1CQ15572 869 aaPredicted RBP17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 ANKRD23Q86SG2 305 aa17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 FTSJ3Q8IY81 847 aaKnown RBP17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 CNKSR2Q8WXI2 1034 aa17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 CLUAP1Q96AJ1 413 aa17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 ARMC5Q96C12 935 aa17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 ABCF2Q9UG63 623 aa17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 TRIM17Q9Y577 477 aa17.86■□□□□ 0.45
SMARCE1-216ENST00000580419 PHF20L1A8MW92 1017 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms