RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 MYH13Q9UKX3 1938 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 IGHDP01880 384 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 CYP2E1P05181 493 aaPredicted RBP13.43□□□□□ -0.26
CHD3-216ENST00000573936 ATP5JP18859 108 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 RGMBQ6NW40 437 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 TMED8Q6PL24 325 aaPredicted RBP13.43□□□□□ -0.26
CHD3-216ENST00000573936 PI16Q6UXB8 463 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 SMC5Q8IY18 1101 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 CCDC102AQ96A19 550 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 FAM163AQ96GL9 167 aaPredicted RBP13.43□□□□□ -0.26
CHD3-216ENST00000573936 RAI14Q9P0K7 980 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 CASP8AP2Q9UKL3 1982 aa13.43□□□□□ -0.26
CHD3-216ENST00000573936 NEFLP07196 543 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 ZNF157P51786 506 aaPredicted RBP13.42□□□□□ -0.26
CHD3-216ENST00000573936 TNFAIP1Q13829 316 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 TBC1D9Q6ZT07 1266 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 ZIC5Q96T25 663 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 GBA2Q9HCG7 927 aaPredicted RBP13.42□□□□□ -0.26
CHD3-216ENST00000573936 ECHDC1Q9NTX5 307 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 TMOD2Q9NZR1 351 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 ZNF70Q9UC06 446 aaPredicted RBP13.42□□□□□ -0.26
CHD3-216ENST00000573936 PPP2R3BQ9Y5P8 575 aa13.42□□□□□ -0.26
CHD3-216ENST00000573936 TTC41PQ6P2S7 1318 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 ERC2O15083 957 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 MAP4K4O95819 1239 aaPredicted RBP13.41□□□□□ -0.26
CHD3-216ENST00000573936 TNNI2P48788 182 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 MECOMQ03112 1051 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 MAP3K12Q12852 859 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 SPDYE2Q495Y8 402 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 APOBEC3HQ6NTF7 200 aaKnown RBP13.41□□□□□ -0.26
CHD3-216ENST00000573936 NSUN4Q96CB9 384 aaKnown RBP13.41□□□□□ -0.26
CHD3-216ENST00000573936 BOLA2Q9H3K6 86 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 TDRD3Q9H7E2 651 aaKnown RBP13.41□□□□□ -0.26
CHD3-216ENST00000573936 VEZTQ9HBM0 779 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 SAGE1Q9NXZ1 904 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 DAGLAQ9Y4D2 1042 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 PCDHAC2Q9Y5I4 1007 aa13.41□□□□□ -0.26
CHD3-216ENST00000573936 GAKO14976 1311 aa13.4□□□□□ -0.26
CHD3-216ENST00000573936 CLRN2A0PK11 232 aa13.4□□□□□ -0.26
CHD3-216ENST00000573936 TRPA1O75762 1119 aa13.4□□□□□ -0.26
CHD3-216ENST00000573936 NF2P35240 595 aa13.4□□□□□ -0.26
CHD3-216ENST00000573936 DIXDC1Q155Q3 683 aa13.4□□□□□ -0.26
CHD3-216ENST00000573936 NAA16Q6N069 864 aaPredicted RBP13.4□□□□□ -0.26
CHD3-216ENST00000573936 DNAJC2Q99543 621 aaKnown RBP13.4□□□□□ -0.26
CHD3-216ENST00000573936 HAUS7Q99871 368 aa13.4□□□□□ -0.26
CHD3-216ENST00000573936 NOL10Q9BSC4 688 aaKnown RBP13.4□□□□□ -0.26
CHD3-216ENST00000573936 MROH7-TTC4A0A0A0MT08 1334 aa13.39□□□□□ -0.27
CHD3-216ENST00000573936 IDH1O75874 414 aaKnown RBP13.39□□□□□ -0.27
CHD3-216ENST00000573936 KIF23Q02241 960 aaPredicted RBP13.39□□□□□ -0.27
CHD3-216ENST00000573936 FKBP1CQ5VVH2 108 aa13.39□□□□□ -0.27
CHD3-216ENST00000573936 CDCA5Q96FF9 252 aa13.39□□□□□ -0.27
CHD3-216ENST00000573936 DEFB129Q9H1M3 183 aa13.39□□□□□ -0.27
CHD3-216ENST00000573936 PIH1D3Q9NQM4 214 aaKnown RBP13.39□□□□□ -0.27
CHD3-216ENST00000573936 USP40Q9NVE5 1235 aa13.39□□□□□ -0.27
CHD3-216ENST00000573936 PAG1Q9NWQ8 432 aa13.39□□□□□ -0.27
CHD3-216ENST00000573936 TNRC18O15417 2968 aaPredicted RBP13.39□□□□□ -0.27
CHD3-216ENST00000573936 PAPPA2Q9BXP8 1791 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 PDE4DIPQ5VU43 2346 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 GPR75-ASB3A0A0A6YYF3 556 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 FAM155AB1AL88 458 aaPredicted RBP13.38□□□□□ -0.27
CHD3-216ENST00000573936 GOLIM4O00461 696 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 GLRX3O76003 335 aaKnown RBP13.38□□□□□ -0.27
CHD3-216ENST00000573936 BAG3O95817 575 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 MX1P20591 662 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 NUCB1Q02818 461 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 B4GALNT3Q6L9W6 998 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 CHD1LQ86WJ1 897 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 CERS3Q8IU89 383 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 ANTXR1Q9H6X2 564 aa13.38□□□□□ -0.27
CHD3-216ENST00000573936 TCP10L2B9ZVM9 353 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 PLCG2P16885 1265 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 BTDP43251 543 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 SOX10P56693 466 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 RASA3Q14644 834 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 SUPT20HL1Q3ZLR7 823 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 ZSCAN25Q6NSZ9 544 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 CDC42EP5Q6NZY7 148 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 FAM83AQ86UY5 434 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 REM2Q8IYK8 340 aaPredicted RBP13.37□□□□□ -0.27
CHD3-216ENST00000573936 LNPKQ9C0E8 428 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.37□□□□□ -0.271e-6■■■□□ 15
CHD3-216ENST00000573936 RNF186Q9NXI6 227 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 STAP2Q9UGK3 403 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 SCAF8Q9UPN6 1271 aaKnown RBP13.37□□□□□ -0.27
CHD3-216ENST00000573936 NDUFB9Q9Y6M9 179 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 AKAP11Q9UKA4 1901 aa13.37□□□□□ -0.27
CHD3-216ENST00000573936 SLC10A3P09131 477 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 CYP7A1P22680 504 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 FKBP1BP68106 108 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 LRRFIP1Q32MZ4 808 aaKnown RBP13.36□□□□□ -0.27
CHD3-216ENST00000573936 MAGEB6Q8N7X4 407 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 ZNF384Q8TF68 577 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 IDI2Q9BXS1 227 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 AOX1Q06278 1338 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 SALL3Q9BXA9 1300 aa13.36□□□□□ -0.27
CHD3-216ENST00000573936 ECM29Q5VYK3 1845 aa13.35□□□□□ -0.27
CHD3-216ENST00000573936 PDE1AP54750 535 aa13.35□□□□□ -0.27
CHD3-216ENST00000573936 PPP4CP60510 307 aa13.35□□□□□ -0.27
CHD3-216ENST00000573936 SLC9C2Q5TAH2 1124 aa13.35□□□□□ -0.27
CHD3-216ENST00000573936 ERICH6BQ5W0A0 696 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms