RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 H7C1D1 291 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 DYNC1I1O14576 645 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 VAMP4O75379 141 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 UFL1O94874 794 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 CWF19L2Q2TBE0 894 aaKnown RBP7.99□□□□□ -1.13
NUP88-206ENST00000573169 SIRT2Q8IXJ6 389 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 PI4KAP1Q8N8J0 262 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 RNF166Q96A37 237 aaPredicted RBP7.99□□□□□ -1.13
NUP88-206ENST00000573169 EYA3Q99504 573 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 ZC3H12CQ9C0D7 883 aaKnown RBP7.99□□□□□ -1.13
NUP88-206ENST00000573169 LNPKQ9C0E8 428 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 DCTPP1Q9H773 170 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 PRDM10Q9NQV6 1147 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 ANKIB1Q9P2G1 1089 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 TSKSQ9UJT2 592 aa7.99□□□□□ -1.13
NUP88-206ENST00000573169 ASTN2O75129 1339 aaPredicted RBP7.99□□□□□ -1.13
NUP88-206ENST00000573169 DDX58O95786 925 aaKnown RBP7.98□□□□□ -1.13
NUP88-206ENST00000573169 MSNP26038 577 aaKnown RBP7.98□□□□□ -1.13
NUP88-206ENST00000573169 PTGDRQ13258 359 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 TWISTNBQ3B726 338 aaPredicted RBP7.98□□□□□ -1.13
NUP88-206ENST00000573169 ZSCAN23Q3MJ62 389 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 CCDC152Q4G0S7 254 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 KSR2Q6VAB6 950 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 CDC37L1Q7L3B6 337 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 SAPCD2Q86UD0 394 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 DPF2Q92785 391 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 ZIC5Q96T25 663 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 USP26Q9BXU7 913 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 PODXL2Q9NZ53 605 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 GGA1Q9UJY5 639 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 ZKSCAN5Q9Y2L8 839 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 DDX49Q9Y6V7 483 aaKnown RBP7.98□□□□□ -1.13
NUP88-206ENST00000573169 CDHR2Q9BYE9 1310 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 TRPM7Q96QT4 1865 aa7.98□□□□□ -1.13
NUP88-206ENST00000573169 NEURL1BA8MQ27 555 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 EPB41L2O43491 1005 aaKnown RBP7.97□□□□□ -1.13
NUP88-206ENST00000573169 VIL1P09327 827 aaKnown RBP7.97□□□□□ -1.13
NUP88-206ENST00000573169 ECE1P42892 770 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 CTSWP56202 376 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 MAP2K1Q02750 393 aaPredicted RBP7.97□□□□□ -1.13
NUP88-206ENST00000573169 C6orf132Q5T0Z8 1188 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 ANKRD18AQ8IVF6 992 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 PLEKHM2Q8IWE5 1019 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 TTLL11Q8NHH1 800 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 MXD3Q9BW11 206 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 API5Q9BZZ5 524 aaKnown RBP7.97□□□□□ -1.13
NUP88-206ENST00000573169 GREM2Q9H772 168 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 SLC24A3Q9HC58 644 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 SCAF8Q9UPN6 1271 aaKnown RBP7.97□□□□□ -1.13
NUP88-206ENST00000573169 SCN9AQ15858 1988 aa7.97□□□□□ -1.13
NUP88-206ENST00000573169 H7C1W4 665 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 MBD3O95983 291 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 GSPT1P15170 499 aaKnown RBP7.96□□□□□ -1.14
NUP88-206ENST00000573169 MAP2K5Q13163 448 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 KIF4BQ2VIQ3 1234 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 TTC22Q5TAA0 569 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 ANKRD45Q5TZF3 282 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 INTS3Q68E01 1043 aaKnown RBP7.96□□□□□ -1.14
NUP88-206ENST00000573169 LRSAM1Q6UWE0 723 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 UBE3BQ7Z3V4 1068 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 KRT26Q7Z3Y9 468 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 SMAP1Q8IYB5 467 aaPredicted RBP7.96□□□□□ -1.14
NUP88-206ENST00000573169 STK31Q9BXU1 1019 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 RBSNQ9H1K0 784 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 OSBPL3Q9H4L5 887 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 CCDC39Q9UFE4 941 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 PRDM4Q9UKN5 801 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 MINPP1Q9UNW1 487 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 THSD7BQ9C0I4 1608 aa7.96□□□□□ -1.14
NUP88-206ENST00000573169 GPR37O15354 613 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 HSP90B1P14625 803 aaKnown RBP7.95□□□□□ -1.14
NUP88-206ENST00000573169 PTPREP23469 700 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 ATP2B4P23634 1241 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 RPS12P25398 132 aaKnown RBP7.95□□□□□ -1.14
NUP88-206ENST00000573169 MAP2K2P36507 400 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 MCM2P49736 904 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 CASP7P55210 303 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 HUNKP57058 714 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 NEXNQ0ZGT2 675 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 FLIIQ13045 1269 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 CUL4AQ13619 759 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 TSR1Q2NL82 804 aaKnown RBP7.95□□□□□ -1.14
NUP88-206ENST00000573169 RSBN1LQ6PCB5 846 aaPredicted RBP7.95□□□□□ -1.14
NUP88-206ENST00000573169 SASS6Q6UVJ0 657 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 TXNRD3Q86VQ6 643 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 RPAP2Q8IXW5 612 aaPredicted RBP7.95□□□□□ -1.14
NUP88-206ENST00000573169 ANKRD44Q8N8A2 993 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 GGA3Q9NZ52 723 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 ZDHHC9Q9Y397 364 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 XDHP47989 1333 aa7.95□□□□□ -1.14
NUP88-206ENST00000573169 SPEF2Q9C093 1822 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 F6X3S4 739 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 SNAP23O00161 211 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 KLRK1P26718 216 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 GTF2F1P35269 517 aaKnown RBP eCLIP7.94□□□□□ -1.14
NUP88-206ENST00000573169 FKBP5Q13451 457 aaPredicted RBP7.94□□□□□ -1.14
NUP88-206ENST00000573169 SCARF1Q14162 830 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 GCKRQ14397 625 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 UVSSAQ2YD98 709 aa7.94□□□□□ -1.14
NUP88-206ENST00000573169 UTP14CQ5TAP6 766 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms