RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ARHGAP33O14559 1287 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 MYO1BO43795 1136 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 NF2P35240 595 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 DLGAP5Q15398 846 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 MFSD14BQ5SR56 506 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 APOBEC3FQ8IUX4 373 aaKnown RBP10.05□□□□□ -0.8
VPS53-214ENST00000572607 ITPRIPQ8IWB1 547 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 VGLL2Q8N8G2 317 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 TDRD7Q8NHU6 1098 aaKnown RBP10.05□□□□□ -0.8
VPS53-214ENST00000572607 TBC1D22AQ8WUA7 517 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 LPIN2Q92539 896 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 COPRSQ9NQ92 184 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 GNL3LQ9NVN8 582 aaKnown RBP10.05□□□□□ -0.8
VPS53-214ENST00000572607 FAM205AQ6ZU69 1335 aa10.05□□□□□ -0.8
VPS53-214ENST00000572607 FAM155AB1AL88 458 aaPredicted RBP10.04□□□□□ -0.8
VPS53-214ENST00000572607 WNT10BO00744 389 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 RBM5P52756 815 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS53-214ENST00000572607 CHAF1AQ13111 956 aaPredicted RBP10.04□□□□□ -0.8
VPS53-214ENST00000572607 MTX1Q13505 466 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 ATP2B3Q16720 1220 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 NBPF9Q3BBW0 867 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 FBXO33Q7Z6M2 555 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 CDCA5Q96FF9 252 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 GBA2Q9HCG7 927 aaPredicted RBP10.04□□□□□ -0.8
VPS53-214ENST00000572607 TNNQ9UQP3 1299 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 PSME4Q14997 1843 aa10.04□□□□□ -0.8
VPS53-214ENST00000572607 ASTN2O75129 1339 aaPredicted RBP10.04□□□□□ -0.8
VPS53-214ENST00000572607 ZNF646O15015 1829 aaPredicted RBP10.03□□□□□ -0.8
VPS53-214ENST00000572607 HUNKP57058 714 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 CFAP100Q494V2 611 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 ATG9AQ7Z3C6 839 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 CERS5Q8N5B7 392 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 BEGAINQ9BUH8 593 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 TTF2Q9UNY4 1162 aaKnown RBP10.03□□□□□ -0.8
VPS53-214ENST00000572607 IQSEC3Q9UPP2 1182 aaPredicted RBP10.03□□□□□ -0.8
VPS53-214ENST00000572607 PA2G4Q9UQ80 394 aaKnown RBP10.03□□□□□ -0.8
VPS53-214ENST00000572607 AKAP2Q9Y2D5 859 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 A0A1B0GUL6 1792 aa10.03□□□□□ -0.8
VPS53-214ENST00000572607 CA12O43570 354 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 TBC1D12O60347 775 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 FGFR2P21802 821 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 BCAMP50895 628 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 FKBP1BP68106 108 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 G3BP1Q13283 466 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS53-214ENST00000572607 DGKZQ13574 1117 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 TTLL12Q14166 644 aaPredicted RBP10.02□□□□□ -0.81
VPS53-214ENST00000572607 MTMR14Q8NCE2 650 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 VEZTQ9HBM0 779 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 SERPINA10Q9UK55 444 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 MAST3O60307 1309 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 HTTP42858 3142 aa10.02□□□□□ -0.81
VPS53-214ENST00000572607 MKI67P46013 3256 aaKnown RBP10.01□□□□□ -0.81
VPS53-214ENST00000572607 OS9Q13438 667 aaPredicted RBP10.01□□□□□ -0.81
VPS53-214ENST00000572607 DSG2Q14126 1118 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 RGMBQ6NW40 437 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.01□□□□□ -0.81
VPS53-214ENST00000572607 WDR66Q8TBY9 1149 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 CCDC102AQ96A19 550 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 CHMP4BQ9H444 224 aaKnown RBP10.01□□□□□ -0.81
VPS53-214ENST00000572607 RCAN3Q9UKA8 241 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 SUGT1Q9Y2Z0 365 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 PPP2R3BQ9Y5P8 575 aa10.01□□□□□ -0.81
VPS53-214ENST00000572607 COL1A1P02452 1464 aaPredicted RBP10.01□□□□□ -0.81
VPS53-214ENST00000572607 CLRN2A0PK11 232 aa10□□□□□ -0.81
VPS53-214ENST00000572607 SEMA3EO15041 775 aa10□□□□□ -0.81
VPS53-214ENST00000572607 TNNI2P48788 182 aa10□□□□□ -0.81
VPS53-214ENST00000572607 ZNF157P51786 506 aaPredicted RBP10□□□□□ -0.81
VPS53-214ENST00000572607 TFCP2Q12800 502 aa10□□□□□ -0.81
VPS53-214ENST00000572607 NOGQ13253 232 aa10□□□□□ -0.81
VPS53-214ENST00000572607 TNFAIP1Q13829 316 aa10□□□□□ -0.81
VPS53-214ENST00000572607 MVPQ14764 893 aaKnown RBP10□□□□□ -0.81
VPS53-214ENST00000572607 GORABQ5T7V8 394 aa10□□□□□ -0.81
VPS53-214ENST00000572607 ADGRD1Q6QNK2 874 aa10□□□□□ -0.81
VPS53-214ENST00000572607 ZBED3Q96IU2 234 aaPredicted RBP10□□□□□ -0.81
VPS53-214ENST00000572607 C1orf115Q9H7X2 142 aa10□□□□□ -0.81
VPS53-214ENST00000572607 DENND2AQ9ULE3 1009 aa10□□□□□ -0.81
VPS53-214ENST00000572607 SCAF8Q9UPN6 1271 aaKnown RBP10□□□□□ -0.81
VPS53-214ENST00000572607 PNMA6EA0A0J9YXQ4 647 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 A0A1B0GUL7 405 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 TK2O00142 265 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 CRKP46108 304 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 ATP8B2P98198 1209 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 HDLBPQ00341 1268 aaKnown RBP9.99□□□□□ -0.81
VPS53-214ENST00000572607 ARMC9Q7Z3E5 817 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 ZGPATQ8N5A5 531 aaKnown RBP9.99□□□□□ -0.81
VPS53-214ENST00000572607 PANK1Q8TE04 598 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 TEKT1Q969V4 418 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 PRMT6Q96LA8 375 aaPredicted RBP9.99□□□□□ -0.81
VPS53-214ENST00000572607 NEUROD6Q96NK8 337 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 DEFB129Q9H1M3 183 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 TMOD2Q9NZR1 351 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 DDX19BQ9UMR2 479 aa9.99□□□□□ -0.81
VPS53-214ENST00000572607 ZBTB7BO15156 539 aaPredicted RBP9.98□□□□□ -0.81
VPS53-214ENST00000572607 SURF6O75683 361 aaKnown RBP9.98□□□□□ -0.81
VPS53-214ENST00000572607 RLBP1P12271 317 aa9.98□□□□□ -0.81
VPS53-214ENST00000572607 SOX10P56693 466 aa9.98□□□□□ -0.81
VPS53-214ENST00000572607 SUPT20HL1Q3ZLR7 823 aa9.98□□□□□ -0.81
VPS53-214ENST00000572607 PRAMEF18Q5VWM3 479 aa9.98□□□□□ -0.81
VPS53-214ENST00000572607 CCDC102BQ68D86 513 aa9.98□□□□□ -0.81
VPS53-214ENST00000572607 PPP1R12BO60237 982 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms