RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 KSR2Q6VAB6 950 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 CCDC146Q8IYE0 955 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 PI4KAP1Q8N8J0 262 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 FAM161BQ96MY7 647 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 PLA2G12BQ9BX93 195 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 CHMP4AQ9BY43 222 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.71■□□□□ 0.27
CCDC40-208ENST00000572270 KCNH4Q9UQ05 1017 aa16.71■□□□□ 0.27
CCDC40-208ENST00000572270 DDX60LQ5H9U9 1706 aaKnown RBP16.7■□□□□ 0.26
CCDC40-208ENST00000572270 NEURL1BA8MQ27 555 aa16.7■□□□□ 0.26
CCDC40-208ENST00000572270 H7C1W4 665 aa16.7■□□□□ 0.26
CCDC40-208ENST00000572270 CYP2C8P10632 490 aa16.7■□□□□ 0.26
CCDC40-208ENST00000572270 CACNB3P54284 484 aa16.7■□□□□ 0.26
CCDC40-208ENST00000572270 CCDC30Q5VVM6 783 aa16.7■□□□□ 0.26
CCDC40-208ENST00000572270 SYMPKQ92797 1274 aaKnown RBP16.7■□□□□ 0.26
CCDC40-208ENST00000572270 C11orf49Q9H6J7 331 aa16.7■□□□□ 0.26
CCDC40-208ENST00000572270 POTEB2H3BUK9 544 aa16.69■□□□□ 0.26
CCDC40-208ENST00000572270 ZNF697Q5TEC3 545 aa16.69■□□□□ 0.26
CCDC40-208ENST00000572270 FAM83AQ86UY5 434 aa16.69■□□□□ 0.26
CCDC40-208ENST00000572270 RPAP1Q9BWH6 1393 aaPredicted RBP16.68■□□□□ 0.26
CCDC40-208ENST00000572270 CSF1RP07333 972 aa16.68■□□□□ 0.26
CCDC40-208ENST00000572270 INPP5BP32019 993 aa16.68■□□□□ 0.26
CCDC40-208ENST00000572270 COA7Q96BR5 231 aa16.68■□□□□ 0.26
CCDC40-208ENST00000572270 LAMA2P24043 3122 aaKnown RBP16.68■□□□□ 0.26
CCDC40-208ENST00000572270 PLIN1O60240 522 aa16.67■□□□□ 0.26
CCDC40-208ENST00000572270 IFIT5Q13325 482 aaKnown RBP16.67■□□□□ 0.26
CCDC40-208ENST00000572270 MIGA2Q7L4E1 593 aa16.67■□□□□ 0.26
CCDC40-208ENST00000572270 TDRD7Q8NHU6 1098 aaKnown RBP16.67■□□□□ 0.26
CCDC40-208ENST00000572270 MAFAQ8NHW3 353 aaPredicted RBP16.67■□□□□ 0.26
CCDC40-208ENST00000572270 TEKT1Q969V4 418 aa16.67■□□□□ 0.26
CCDC40-208ENST00000572270 MOGSQ13724 837 aa16.66■□□□□ 0.26
CCDC40-208ENST00000572270 CHMP3Q9Y3E7 222 aa16.66■□□□□ 0.26
CCDC40-208ENST00000572270 PRUNE2Q8WUY3 3088 aa16.66■□□□□ 0.26
CCDC40-208ENST00000572270 HIBADHP31937 336 aaKnown RBP16.65■□□□□ 0.26
CCDC40-208ENST00000572270 HDLBPQ00341 1268 aaKnown RBP16.65■□□□□ 0.26
CCDC40-208ENST00000572270 MDM2Q00987 491 aaPredicted RBP16.65■□□□□ 0.26
CCDC40-208ENST00000572270 GCKRQ14397 625 aa16.65■□□□□ 0.26
CCDC40-208ENST00000572270 FKBP1CQ5VVH2 108 aa16.65■□□□□ 0.26
CCDC40-208ENST00000572270 GPAT2Q6NUI2 795 aa16.65■□□□□ 0.26
CCDC40-208ENST00000572270 FASTKD5Q7L8L6 764 aaKnown RBP16.65■□□□□ 0.26
CCDC40-208ENST00000572270 SMCR8Q8TEV9 937 aaPredicted RBP16.65■□□□□ 0.26
CCDC40-208ENST00000572270 RUNDC1Q96C34 613 aa16.65■□□□□ 0.26
CCDC40-208ENST00000572270 MYH16Q9H6N6 1097 aa16.65■□□□□ 0.26
CCDC40-208ENST00000572270 HMX1Q9NP08 348 aaPredicted RBP16.65■□□□□ 0.26
CCDC40-208ENST00000572270 CXCL11O14625 94 aa16.64■□□□□ 0.25
CCDC40-208ENST00000572270 HMGCRP04035 888 aa16.64■□□□□ 0.25
CCDC40-208ENST00000572270 TAF7LQ5H9L4 462 aa16.64■□□□□ 0.25
CCDC40-208ENST00000572270 COL2A1P02458 1487 aaPredicted RBP16.64■□□□□ 0.25
CCDC40-208ENST00000572270 AK9Q5TCS8 1911 aa16.64■□□□□ 0.25
CCDC40-208ENST00000572270 GYG1P46976 350 aa16.63■□□□□ 0.25
CCDC40-208ENST00000572270 NOL9Q5SY16 702 aaKnown RBP16.63■□□□□ 0.25
CCDC40-208ENST00000572270 STK31Q9BXU1 1019 aa16.63■□□□□ 0.25
CCDC40-208ENST00000572270 CNNM1Q9NRU3 951 aa16.63■□□□□ 0.25
CCDC40-208ENST00000572270 IFT57Q9NWB7 429 aa16.63■□□□□ 0.25
CCDC40-208ENST00000572270 ZNF853P0CG23 659 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 CASP7P55210 303 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 GNAI1P63096 354 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 LDHAL6AQ6ZMR3 332 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 GADL1Q6ZQY3 521 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 VPS37DQ86XT2 251 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 TBC1D22AQ8WUA7 517 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 ZDHHC15Q96MV8 337 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 CDX2Q99626 313 aaPredicted RBP16.62■□□□□ 0.25
CCDC40-208ENST00000572270 ZNF112Q9UJU3 913 aa16.62■□□□□ 0.25
CCDC40-208ENST00000572270 FRAT2O75474 233 aaPredicted RBP16.61■□□□□ 0.25
CCDC40-208ENST00000572270 PLA2G5P39877 138 aa16.61■□□□□ 0.25
CCDC40-208ENST00000572270 CALD1Q05682 793 aaKnown RBP16.61■□□□□ 0.25
CCDC40-208ENST00000572270 CHAF1AQ13111 956 aaPredicted RBP16.61■□□□□ 0.25
CCDC40-208ENST00000572270 UBE4AQ14139 1066 aa16.61■□□□□ 0.25
CCDC40-208ENST00000572270 C8orf58Q8NAV2 365 aa16.61■□□□□ 0.25
CCDC40-208ENST00000572270 LBHD1Q9BQE6 289 aaPredicted RBP16.61■□□□□ 0.25
CCDC40-208ENST00000572270 OGDHLQ9ULD0 1010 aa16.61■□□□□ 0.25
CCDC40-208ENST00000572270 SLC45A1Q9Y2W3 748 aa16.61■□□□□ 0.25
CCDC40-208ENST00000572270 MAST3O60307 1309 aa16.61■□□□□ 0.25
CCDC40-208ENST00000572270 DOCK3Q8IZD9 2030 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 A0A0G2JLL6 359 aaPredicted RBP16.6■□□□□ 0.25
CCDC40-208ENST00000572270 TNFRSF10AO00220 468 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 GRIK5Q16478 980 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 CCDC57Q2TAC2 916 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 PRRT2Q7Z6L0 340 aaPredicted RBP16.6■□□□□ 0.25
CCDC40-208ENST00000572270 FAM122AQ96E09 287 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 FAM84BQ96KN1 310 aaPredicted RBP16.6■□□□□ 0.25
CCDC40-208ENST00000572270 PFASO15067 1338 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 MUC3AQ02505 3323 aa16.6■□□□□ 0.25
CCDC40-208ENST00000572270 WDR43Q15061 677 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCDC40-208ENST00000572270 ANKRD13CQ8N6S4 541 aa16.59■□□□□ 0.25
CCDC40-208ENST00000572270 FAM151AQ8WW52 585 aa16.59■□□□□ 0.25
CCDC40-208ENST00000572270 PICK1Q9NRD5 415 aa16.59■□□□□ 0.25
CCDC40-208ENST00000572270 APOBEC3HQ6NTF7 200 aaKnown RBP16.58■□□□□ 0.24
CCDC40-208ENST00000572270 MRIQ9BWK5 157 aa16.58■□□□□ 0.24
CCDC40-208ENST00000572270 RAPGEFL1Q9UHV5 662 aa16.58■□□□□ 0.24
CCDC40-208ENST00000572270 IQSEC3Q9UPP2 1182 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-208ENST00000572270 ZHX2Q9Y6X8 837 aa16.58■□□□□ 0.24
CCDC40-208ENST00000572270 FOSL2P15408 326 aa16.57■□□□□ 0.24
CCDC40-208ENST00000572270 TCP10Q12799 353 aa16.57■□□□□ 0.24
CCDC40-208ENST00000572270 FAM110CQ1W6H9 321 aa16.57■□□□□ 0.24
CCDC40-208ENST00000572270 MYLIPQ8WY64 445 aa16.57■□□□□ 0.24
CCDC40-208ENST00000572270 ZNF594Q96JF6 807 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-208ENST00000572270 PNMA3Q9UL41 463 aa16.57■□□□□ 0.24
CCDC40-208ENST00000572270 PTPRFP10586 1907 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms