RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LRRC8AQ8IWT6 810 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 FAM200AQ8TCP9 573 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 SRCIN1Q9C0H9 1055 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 STRCQ7RTU9 1775 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 MYO1FO00160 1098 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 PCDHGA4Q9Y5G9 962 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLK3-226ENST00000569406 FAM169AQ9Y6X4 670 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 RBM47A0AV96 593 aaKnown RBP12.4□□□□□ -0.42
CLK3-226ENST00000569406 N4BP1O75113 896 aaKnown RBP12.4□□□□□ -0.42
CLK3-226ENST00000569406 RTN2O75298 545 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 PYGBP11216 843 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 TPP2P29144 1249 aaPredicted RBP12.4□□□□□ -0.42
CLK3-226ENST00000569406 GBP2P32456 591 aaPredicted RBP12.4□□□□□ -0.42
CLK3-226ENST00000569406 MAGEA8P43361 318 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 NUP133Q8WUM0 1156 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 YIPF2Q9BWQ6 316 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 A1CFQ9NQ94 594 aaKnown RBP12.4□□□□□ -0.42
CLK3-226ENST00000569406 CNPY2Q9Y2B0 182 aa12.4□□□□□ -0.42
CLK3-226ENST00000569406 AOX1Q06278 1338 aa12.4□□□□□ -0.43
CLK3-226ENST00000569406 CCT5P48643 541 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 CCDC181Q5TID7 509 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 PROSER2Q86WR7 435 aaPredicted RBP12.39□□□□□ -0.43
CLK3-226ENST00000569406 FUT8Q9BYC5 575 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 L2HGDHQ9H9P8 463 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 BLOC1S6Q9UL45 172 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 ABCA3Q99758 1704 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 ARFGEF2Q9Y6D5 1785 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 SLC5A9Q2M3M2 681 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 THEMIS2Q5TEJ8 643 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 NUTM1Q86Y26 1132 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 RHPN1Q8TCX5 695 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 EBAG9O00559 213 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 IGKV5-2P06315 115 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 ZC3H6P61129 1189 aaKnown RBP12.39□□□□□ -0.43
CLK3-226ENST00000569406 ICA1Q05084 483 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 KCNB1Q14721 858 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 CAMK4Q16566 473 aa12.39□□□□□ -0.43
CLK3-226ENST00000569406 CWF19L2Q2TBE0 894 aaKnown RBP12.39□□□□□ -0.43
CLK3-226ENST00000569406 PREPLQ4J6C6 727 aaPredicted RBP12.39□□□□□ -0.43
CLK3-226ENST00000569406 MSL3Q8N5Y2 521 aaKnown RBP12.39□□□□□ -0.43
CLK3-226ENST00000569406 RAB27AP51159 221 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 DBF4Q9UBU7 674 aaPredicted RBP12.38□□□□□ -0.43
CLK3-226ENST00000569406 PAPPAQ13219 1627 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 CCDC69A6NI79 296 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 DTNBO60941 627 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 CCDC158Q5M9N0 1113 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 NCAPG2Q86XI2 1143 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 IRX2Q9BZI1 471 aaPredicted RBP12.38□□□□□ -0.43
CLK3-226ENST00000569406 UPF3BQ9BZI7 483 aaKnown RBP12.38□□□□□ -0.43
CLK3-226ENST00000569406 MAP3K2Q9Y2U5 619 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 LAMB4A4D0S4 1761 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 NEFHP12036 1026 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 SETDB1Q15047 1291 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 LONRF2Q1L5Z9 754 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 AKNAD1Q5T1N1 836 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 CABLES1Q8TDN4 633 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 CLIC6Q96NY7 704 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 LARP6Q9BRS8 491 aaKnown RBP12.38□□□□□ -0.43
CLK3-226ENST00000569406 NPHP3Q7Z494 1330 aa12.38□□□□□ -0.43
CLK3-226ENST00000569406 CYP27B1O15528 508 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 APOBRQ0VD83 1088 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 SLC39A6Q13433 755 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 LAMB3Q13751 1172 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 KIAA1328Q86T90 577 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 KIAA0825Q8IV33 1275 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 NUP188Q5SRE5 1749 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 PHKG2P15735 406 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 TEFQ10587 303 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 POTEDQ86YR6 584 aa12.37□□□□□ -0.43
CLK3-226ENST00000569406 PRPHP41219 470 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 DBN1Q16643 649 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 KSR2Q6VAB6 950 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 TNS3Q68CZ2 1445 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 PPP1R12BO60237 982 aaPredicted RBP12.36□□□□□ -0.43
CLK3-226ENST00000569406 B4GALNT2Q8NHY0 566 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 EZH1Q92800 747 aaPredicted RBP12.36□□□□□ -0.43
CLK3-226ENST00000569406 SLC52A2Q9HAB3 445 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 TJP1Q07157 1748 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 KIF4AO95239 1232 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 MRPL12P52815 198 aaKnown RBP12.36□□□□□ -0.43
CLK3-226ENST00000569406 COL9A3Q14050 684 aaPredicted RBP12.36□□□□□ -0.43
CLK3-226ENST00000569406 E2F5Q15329 346 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 ZNF790Q6PG37 636 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 CKAP2LQ8IYA6 745 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 BICD1Q96G01 975 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 FUCA2Q9BTY2 467 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 MYO6Q9UM54 1294 aa12.36□□□□□ -0.43
CLK3-226ENST00000569406 AFDNP55196 1824 aaKnown RBP12.36□□□□□ -0.43
CLK3-226ENST00000569406 RAB11FIP3O75154 756 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 SURF6O75683 361 aaKnown RBP12.35□□□□□ -0.43
CLK3-226ENST00000569406 UBE2HP62256 183 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 CEP85LQ5SZL2 805 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 TRIM42Q8IWZ5 723 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 TSGA10Q9BZW7 698 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 USP16Q9Y5T5 823 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 FAM177A1Q8N128 213 aaPredicted RBP12.35□□□□□ -0.43
CLK3-226ENST00000569406 PARD6BQ9BYG5 372 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 FAM204AQ9H8W3 233 aa12.35□□□□□ -0.43
CLK3-226ENST00000569406 CBX8Q9HC52 389 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms