RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 FKBP1CQ5VVH2 108 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 HHIPL2Q6UWX4 724 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 OTUD5Q96G74 571 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 PCDH10Q9P2E7 1040 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 CSADQ9Y600 493 aa12.66□□□□□ -0.38
VPS39-211ENST00000568755 PHIPQ8WWQ0 1821 aa12.65□□□□□ -0.38
VPS39-211ENST00000568755 EYA2O00167 538 aa12.65□□□□□ -0.38
VPS39-211ENST00000568755 IFIT1P09914 478 aaKnown RBP12.65□□□□□ -0.38
VPS39-211ENST00000568755 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
VPS39-211ENST00000568755 TAF1CQ15572 869 aaPredicted RBP12.65□□□□□ -0.38
VPS39-211ENST00000568755 RANBP2P49792 3224 aaKnown RBP12.64□□□□□ -0.39
VPS39-211ENST00000568755 ALDH1L2Q3SY69 923 aa12.64□□□□□ -0.39
VPS39-211ENST00000568755 ATG9AQ7Z3C6 839 aa12.64□□□□□ -0.39
VPS39-211ENST00000568755 ERO1BQ86YB8 467 aa12.64□□□□□ -0.39
VPS39-211ENST00000568755 WRNIP1Q96S55 665 aa12.64□□□□□ -0.39
VPS39-211ENST00000568755 ZFYVE28Q9HCC9 887 aa12.64□□□□□ -0.39
VPS39-211ENST00000568755 ZCCHC17Q9NP64 241 aaKnown RBP12.64□□□□□ -0.39
VPS39-211ENST00000568755 TMOD2Q9NZR1 351 aa12.64□□□□□ -0.39
VPS39-211ENST00000568755 IRF6O14896 467 aa12.63□□□□□ -0.39
VPS39-211ENST00000568755 SLC5A1P13866 664 aa12.63□□□□□ -0.39
VPS39-211ENST00000568755 WDR66Q8TBY9 1149 aa12.63□□□□□ -0.39
VPS39-211ENST00000568755 LPIN2Q92539 896 aa12.63□□□□□ -0.39
VPS39-211ENST00000568755 ZKSCAN4Q969J2 545 aaPredicted RBP12.63□□□□□ -0.39
VPS39-211ENST00000568755 ZNF333Q96JL9 665 aa12.63□□□□□ -0.39
VPS39-211ENST00000568755 DOCK1Q14185 1865 aa12.63□□□□□ -0.39
VPS39-211ENST00000568755 BTBD19C9JJ37 291 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 TLR2O60603 784 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 CETPP11597 493 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 PPIL2Q13356 520 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 HOOK2Q96ED9 719 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 FBXO3Q9UK99 471 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 DAGLAQ9Y4D2 1042 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 PTCH2Q9Y6C5 1203 aa12.62□□□□□ -0.39
VPS39-211ENST00000568755 SZT2Q5T011 3432 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 ATAD5Q96QE3 1844 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 CIAO1O76071 339 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 EN2P19622 333 aaPredicted RBP12.61□□□□□ -0.39
VPS39-211ENST00000568755 PRDX5P30044 214 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 INPP5BP32019 993 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 SNAPC2Q13487 334 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 DIXDC1Q155Q3 683 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 DCAF15Q66K64 600 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 CDC42EP5Q6NZY7 148 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 TRMT2AQ8IZ69 625 aaKnown RBP12.61□□□□□ -0.39
VPS39-211ENST00000568755 FAM151AQ8WW52 585 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 CDCA7LQ96GN5 454 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 ZNF341Q9BYN7 854 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 ARHGAP39Q9C0H5 1083 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 SMC4Q9NTJ3 1288 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 ZNF112Q9UJU3 913 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 SALL1Q9NSC2 1324 aa12.61□□□□□ -0.39
VPS39-211ENST00000568755 LACTBP83111 547 aaPredicted RBP12.6□□□□□ -0.39
VPS39-211ENST00000568755 PPATQ06203 517 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 NFIAQ12857 509 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 ARHGEF6Q15052 776 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 ATP2B3Q16720 1220 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 MIGA2Q7L4E1 593 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 SIL1Q9H173 461 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 ADGRA2Q96PE1 1338 aa12.6□□□□□ -0.39
VPS39-211ENST00000568755 CDK5RAP2Q96SN8 1893 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 MYO5AQ9Y4I1 1855 aaKnown RBP12.59□□□□□ -0.39
VPS39-211ENST00000568755 RFX7Q2KHR2 1363 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 ATRNL1Q5VV63 1379 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 UBTFL1P0CB47 393 aaPredicted RBP12.59□□□□□ -0.39
VPS39-211ENST00000568755 MOGSQ13724 837 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 SLC9C1Q4G0N8 1177 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 NOL9Q5SY16 702 aaKnown RBP12.59□□□□□ -0.39
VPS39-211ENST00000568755 GCC1Q96CN9 775 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 FAM198AQ9UFP1 575 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 KCNH4Q9UQ05 1017 aa12.59□□□□□ -0.39
VPS39-211ENST00000568755 SEMA3EO15041 775 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 WDHD1O75717 1129 aaPredicted RBP12.58□□□□□ -0.4
VPS39-211ENST00000568755 GNRH1P01148 92 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 CT47B1P0C2W7 299 aaPredicted RBP12.58□□□□□ -0.4
VPS39-211ENST00000568755 CTGFP29279 349 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 PHKA1P46020 1223 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 TCP10Q12799 353 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 C17orf99Q6UX52 265 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 NBPF11Q86T75 865 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.58□□□□□ -0.4
VPS39-211ENST00000568755 TMEM106CQ9BVX2 250 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 CEP126Q9P2H0 1117 aa12.58□□□□□ -0.4
VPS39-211ENST00000568755 LDHBP07195 334 aaKnown RBP12.57□□□□□ -0.4
VPS39-211ENST00000568755 ADORA1P30542 326 aa12.57□□□□□ -0.4
VPS39-211ENST00000568755 IL15P40933 162 aaPredicted RBP12.57□□□□□ -0.4
VPS39-211ENST00000568755 KIF22Q14807 665 aa12.57□□□□□ -0.4
VPS39-211ENST00000568755 ANKRD23Q86SG2 305 aa12.57□□□□□ -0.4
VPS39-211ENST00000568755 COPRSQ9NQ92 184 aa12.57□□□□□ -0.4
VPS39-211ENST00000568755 GNL3LQ9NVN8 582 aaKnown RBP12.57□□□□□ -0.4
VPS39-211ENST00000568755 DENND2AQ9ULE3 1009 aa12.57□□□□□ -0.4
VPS39-211ENST00000568755 NOB1Q9ULX3 412 aaKnown RBP12.57□□□□□ -0.4
VPS39-211ENST00000568755 PA2G4Q9UQ80 394 aaKnown RBP12.57□□□□□ -0.4
VPS39-211ENST00000568755 LRRFIP2Q9Y608 721 aaKnown RBP12.57□□□□□ -0.4
VPS39-211ENST00000568755 GAKO14976 1311 aa12.57□□□□□ -0.4
VPS39-211ENST00000568755 FOCADQ5VW36 1801 aa12.56□□□□□ -0.4
VPS39-211ENST00000568755 PDHXO00330 501 aa12.56□□□□□ -0.4
VPS39-211ENST00000568755 PRMT2P55345 433 aa12.56□□□□□ -0.4
VPS39-211ENST00000568755 HABP4Q5JVS0 413 aaKnown RBP12.56□□□□□ -0.4
VPS39-211ENST00000568755 ZFPM1Q8IX07 1006 aa12.56□□□□□ -0.4
VPS39-211ENST00000568755 SH3TC2Q8TF17 1288 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms