RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CCDC8Q9H0W5 538 aaPredicted RBP18.49■□□□□ 0.55
VPS39-210ENST00000568357 ANGEL1Q9UNK9 670 aaKnown RBP18.49■□□□□ 0.55
VPS39-210ENST00000568357 ARAP2Q8WZ64 1704 aa18.49■□□□□ 0.55
VPS39-210ENST00000568357 UQCRFS1P1P0C7P4 283 aa18.48■□□□□ 0.55
VPS39-210ENST00000568357 LDLRAD1Q5T700 205 aa18.48■□□□□ 0.55
VPS39-210ENST00000568357 CDC42EP5Q6NZY7 148 aa18.48■□□□□ 0.55
VPS39-210ENST00000568357 ARMC9Q7Z3E5 817 aa18.48■□□□□ 0.55
VPS39-210ENST00000568357 CTU1Q7Z7A3 348 aaKnown RBP18.48■□□□□ 0.55
VPS39-210ENST00000568357 RASAL3Q86YV0 1011 aa18.48■□□□□ 0.55
VPS39-210ENST00000568357 TLR7Q9NYK1 1049 aaKnown RBP18.48■□□□□ 0.55
VPS39-210ENST00000568357 DBNLQ9UJU6 430 aaKnown RBP18.48■□□□□ 0.55
VPS39-210ENST00000568357 HPS5Q9UPZ3 1129 aa18.48■□□□□ 0.55
VPS39-210ENST00000568357 SSC5DA1L4H1 1573 aa18.47■□□□□ 0.55
VPS39-210ENST00000568357 USP2O75604 605 aaPredicted RBP18.47■□□□□ 0.55
VPS39-210ENST00000568357 MAP3K11Q16584 847 aa18.47■□□□□ 0.55
VPS39-210ENST00000568357 CCDC158Q5M9N0 1113 aa18.47■□□□□ 0.55
VPS39-210ENST00000568357 SPTY2D1Q68D10 685 aaPredicted RBP18.47■□□□□ 0.55
VPS39-210ENST00000568357 SNRKQ9NRH2 765 aa18.47■□□□□ 0.55
VPS39-210ENST00000568357 PAPPA2Q9BXP8 1791 aa18.47■□□□□ 0.55
VPS39-210ENST00000568357 PPP1R12BO60237 982 aaPredicted RBP18.46■□□□□ 0.55
VPS39-210ENST00000568357 HMMRO75330 724 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 TNNI2P48788 182 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 MECOMQ03112 1051 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 HSP90AB4PQ58FF6 505 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 TTC39AQ5SRH9 613 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 FKBP1CQ5VVH2 108 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 ERICH6Q7L0X2 663 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 ERC1Q8IUD2 1116 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 RHPN1Q8TCX5 695 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 ZNF384Q8TF68 577 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 IL1RAPL2Q9NP60 686 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 USP40Q9NVE5 1235 aa18.46■□□□□ 0.55
VPS39-210ENST00000568357 FAM83AQ86UY5 434 aa18.45■□□□□ 0.54
VPS39-210ENST00000568357 DZIP1Q86YF9 867 aaKnown RBP18.45■□□□□ 0.54
VPS39-210ENST00000568357 FAM163AQ96GL9 167 aaPredicted RBP18.45■□□□□ 0.54
VPS39-210ENST00000568357 ZNF512BQ96KM6 892 aaPredicted RBP18.45■□□□□ 0.54
VPS39-210ENST00000568357 CSRNP1Q96S65 589 aa18.45■□□□□ 0.54
VPS39-210ENST00000568357 TMOD2Q9NZR1 351 aa18.45■□□□□ 0.54
VPS39-210ENST00000568357 GAKO14976 1311 aa18.45■□□□□ 0.54
VPS39-210ENST00000568357 APBB1O00213 710 aa18.44■□□□□ 0.54
VPS39-210ENST00000568357 RRP1P56182 461 aaKnown RBP18.44■□□□□ 0.54
VPS39-210ENST00000568357 NFIAQ12857 509 aa18.44■□□□□ 0.54
VPS39-210ENST00000568357 AACSQ86V21 672 aa18.44■□□□□ 0.54
VPS39-210ENST00000568357 CLMNQ96JQ2 1002 aa18.44■□□□□ 0.54
VPS39-210ENST00000568357 CYP2E1P05181 493 aaPredicted RBP18.43■□□□□ 0.54
VPS39-210ENST00000568357 NSUN4Q96CB9 384 aaKnown RBP18.43■□□□□ 0.54
VPS39-210ENST00000568357 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.43■□□□□ 0.54
VPS39-210ENST00000568357 ECM29Q5VYK3 1845 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 ZAP70P43403 619 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 IREB2P48200 963 aaKnown RBP18.42■□□□□ 0.54
VPS39-210ENST00000568357 TCP10Q12799 353 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 MKRN3Q13064 507 aaKnown RBP18.42■□□□□ 0.54
VPS39-210ENST00000568357 ZFPM1Q8IX07 1006 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 SLF2Q8IX21 1173 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 KIF1BPQ96EK5 621 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 SLC10A4Q96EP9 437 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 RAI14Q9P0K7 980 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 LRP2BPQ9P2M1 347 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 FAM198AQ9UFP1 575 aa18.42■□□□□ 0.54
VPS39-210ENST00000568357 GPR75-ASB3A0A0A6YYF3 556 aa18.41■□□□□ 0.54
VPS39-210ENST00000568357 RAB11FIP3O75154 756 aa18.41■□□□□ 0.54
VPS39-210ENST00000568357 FAM151AQ8WW52 585 aa18.41■□□□□ 0.54
VPS39-210ENST00000568357 MROH7-TTC4A0A0A0MT08 1334 aa18.41■□□□□ 0.54
VPS39-210ENST00000568357 MYH13Q9UKX3 1938 aa18.41■□□□□ 0.54
VPS39-210ENST00000568357 UNCXA6NJT0 531 aa18.4■□□□□ 0.54
VPS39-210ENST00000568357 BTDP43251 543 aa18.4■□□□□ 0.54
VPS39-210ENST00000568357 SPRYD7Q5W111 196 aa18.4■□□□□ 0.54
VPS39-210ENST00000568357 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.4■□□□□ 0.54
VPS39-210ENST00000568357 CLASRPQ8N2M8 674 aaKnown RBP18.4■□□□□ 0.54
VPS39-210ENST00000568357 BCL11AQ9H165 835 aa18.4■□□□□ 0.54
VPS39-210ENST00000568357 PIH1D3Q9NQM4 214 aaKnown RBP18.4■□□□□ 0.54
VPS39-210ENST00000568357 NDUFB9Q9Y6M9 179 aa18.4■□□□□ 0.54
VPS39-210ENST00000568357 WDHD1O75717 1129 aaPredicted RBP18.39■□□□□ 0.53
VPS39-210ENST00000568357 LDHCP07864 332 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 RHBDL3P58872 404 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 GSTO1P78417 241 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 HABP4Q5JVS0 413 aaKnown RBP18.39■□□□□ 0.53
VPS39-210ENST00000568357 MIGA2Q7L4E1 593 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 ANKRD13AQ8IZ07 590 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 GCC1Q96CN9 775 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 IDI2Q9BXS1 227 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 PCDHB15Q9Y5E8 787 aa18.39■□□□□ 0.53
VPS39-210ENST00000568357 RGS3P49796 1198 aa18.38■□□□□ 0.53
VPS39-210ENST00000568357 MAP3K9P80192 1104 aa18.38■□□□□ 0.53
VPS39-210ENST00000568357 REM2Q8IYK8 340 aaPredicted RBP18.38■□□□□ 0.53
VPS39-210ENST00000568357 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.38■□□□□ 0.53
VPS39-210ENST00000568357 IFIT2P09913 472 aaKnown RBP18.37■□□□□ 0.53
VPS39-210ENST00000568357 GJA5P36382 358 aa18.37■□□□□ 0.53
VPS39-210ENST00000568357 TM4SF4P48230 202 aa18.37■□□□□ 0.53
VPS39-210ENST00000568357 WNK4Q96J92 1243 aa18.37■□□□□ 0.53
VPS39-210ENST00000568357 CRBNQ96SW2 442 aa18.37■□□□□ 0.53
VPS39-210ENST00000568357 ANTXR1Q9H6X2 564 aa18.37■□□□□ 0.53
VPS39-210ENST00000568357 ELP3Q9H9T3 547 aa18.37■□□□□ 0.53
VPS39-210ENST00000568357 DDX4Q9NQI0 724 aaKnown RBP18.37■□□□□ 0.53
VPS39-210ENST00000568357 SMARCA5O60264 1052 aaPredicted RBP18.36■□□□□ 0.53
VPS39-210ENST00000568357 ENTPD3O75355 529 aa18.36■□□□□ 0.53
VPS39-210ENST00000568357 VGLL4Q14135 290 aa18.36■□□□□ 0.53
VPS39-210ENST00000568357 NAA16Q6N069 864 aaPredicted RBP18.36■□□□□ 0.53
VPS39-210ENST00000568357 SH3BP5LQ7L8J4 393 aa18.36■□□□□ 0.53
VPS39-210ENST00000568357 ADGRA1Q86SQ6 560 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms