RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SPATA31A1Q5TZJ5 1347 aa8.01□□□□□ -1.13
VPS39-209ENST00000568029 WASHC2AQ641Q2 1341 aa8.01□□□□□ -1.13
VPS39-209ENST00000568029 SBNO1A3KN83 1393 aa8□□□□□ -1.13
VPS39-209ENST00000568029 CCINQ13939 588 aa8□□□□□ -1.13
VPS39-209ENST00000568029 DCAF11Q8TEB1 546 aa8□□□□□ -1.13
VPS39-209ENST00000568029 GSX2Q9BZM3 304 aa8□□□□□ -1.13
VPS39-209ENST00000568029 DNAJC25Q9H1X3 360 aa8□□□□□ -1.13
VPS39-209ENST00000568029 PARP4Q9UKK3 1724 aaKnown RBP8□□□□□ -1.13
VPS39-209ENST00000568029 CCDC7Q96M83 1385 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 DCDC2BA2VCK2 349 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 VSIG8P0DPA2 414 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 SFSWAPQ12872 951 aaKnown RBP7.99□□□□□ -1.13
VPS39-209ENST00000568029 CHRNA2Q15822 529 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 C8orf34Q49A92 452 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 NLRP13Q86W25 1043 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 SNX29Q8TEQ0 813 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 ABHD17AQ96GS6 310 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 SYT17Q9BSW7 474 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 USP35Q9P2H5 1018 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 WNK3Q9BYP7 1800 aa7.99□□□□□ -1.13
VPS39-209ENST00000568029 LMO7Q8WWI1 1683 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 ARHGEF10O15013 1369 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 SPATA31E1Q6ZUB1 1445 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 H3BM21 787 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 MAP3K6O95382 1288 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 P4HBP07237 508 aaKnown RBP7.98□□□□□ -1.13
VPS39-209ENST00000568029 FGFR3P22607 806 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 ENOX2Q16206 610 aaKnown RBP7.98□□□□□ -1.13
VPS39-209ENST00000568029 EAPPQ56P03 285 aaPredicted RBP7.98□□□□□ -1.13
VPS39-209ENST00000568029 TMEM132EQ6IEE7 984 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 FAM196AQ6ZSG2 479 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 ZNF438Q7Z4V0 828 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 VWA5B2Q8N398 1253 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 PMFBP1Q8TBY8 1022 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 BCL2L13Q9BXK5 485 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 CARD11Q9BXL7 1154 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 ELP3Q9H9T3 547 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 STRN4Q9NRL3 753 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 HCN2Q9UL51 889 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 USP20Q9Y2K6 914 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 ADGRF5Q8IZF2 1346 aa7.98□□□□□ -1.13
VPS39-209ENST00000568029 KIAA0232Q92628 1395 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 CDC14CA4D256 554 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 TNFRSF21O75509 655 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 HOXD8P13378 290 aaPredicted RBP7.97□□□□□ -1.13
VPS39-209ENST00000568029 SPEM2Q0P670 501 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 FOXD4L4Q8WXT5 416 aaPredicted RBP7.97□□□□□ -1.13
VPS39-209ENST00000568029 PMEPA1Q969W9 287 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 NIF3L1Q9GZT8 377 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 AVENQ9NQS1 362 aaPredicted RBP7.97□□□□□ -1.13
VPS39-209ENST00000568029 USP47Q96K76 1375 aa7.97□□□□□ -1.13
VPS39-209ENST00000568029 PAPPAQ13219 1627 aa7.96□□□□□ -1.13
VPS39-209ENST00000568029 SSH2Q76I76 1423 aa7.96□□□□□ -1.13
VPS39-209ENST00000568029 FBF1Q8TES7 1133 aa7.96□□□□□ -1.14
VPS39-209ENST00000568029 CSRNP1Q96S65 589 aa7.96□□□□□ -1.14
VPS39-209ENST00000568029 ABI2Q9NYB9 513 aaPredicted RBP7.96□□□□□ -1.14
VPS39-209ENST00000568029 ZNF16P17020 682 aaPredicted RBP7.95□□□□□ -1.14
VPS39-209ENST00000568029 SOX18P35713 384 aa7.95□□□□□ -1.14
VPS39-209ENST00000568029 SAFB2Q14151 953 aaKnown RBP eCLIP7.95□□□□□ -1.14
VPS39-209ENST00000568029 RGL3Q3MIN7 710 aa7.95□□□□□ -1.14
VPS39-209ENST00000568029 ALG1LQ6GMV1 187 aa7.95□□□□□ -1.14
VPS39-209ENST00000568029 KIF7Q2M1P5 1343 aa7.95□□□□□ -1.14
VPS39-209ENST00000568029 ROCK2O75116 1388 aaKnown RBP7.95□□□□□ -1.14
VPS39-209ENST00000568029 YTHDC2Q9H6S0 1430 aaKnown RBP7.95□□□□□ -1.14
VPS39-209ENST00000568029 A6NHS1 94 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 EIF1AYO14602 144 aaKnown RBP7.94□□□□□ -1.14
VPS39-209ENST00000568029 CPNE3O75131 537 aaKnown RBP7.94□□□□□ -1.14
VPS39-209ENST00000568029 PRPF40AO75400 957 aaKnown RBP7.94□□□□□ -1.14
VPS39-209ENST00000568029 CD33P20138 364 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 ATP2B2Q01814 1243 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 PRDM11Q9NQV5 511 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 TMEM63CQ9P1W3 806 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.94□□□□□ -1.14
VPS39-209ENST00000568029 TOPAZ1Q8N9V7 1692 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 PRR36Q9H6K5 1346 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 AKAP12Q02952 1782 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 TUBGCP6Q96RT7 1819 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 PIK3C2GO75747 1445 aa7.94□□□□□ -1.14
VPS39-209ENST00000568029 TERTO14746 1132 aaKnown RBP7.93□□□□□ -1.14
VPS39-209ENST00000568029 SASH3O75995 380 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 TTC39BQ5VTQ0 682 aaPredicted RBP7.93□□□□□ -1.14
VPS39-209ENST00000568029 OR13H1Q8NG92 308 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 GIPC2Q8TF65 315 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 FRMD6Q96NE9 622 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 PNMA5Q96PV4 448 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 SLC30A3Q99726 388 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 BCL11AQ9H165 835 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 ZFYVE28Q9HCC9 887 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 ABCC11Q96J66 1382 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 ATP10DQ9P241 1426 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 ATP7BP35670 1465 aa7.93□□□□□ -1.14
VPS39-209ENST00000568029 PNMA6FA0A0J9YX94 578 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 PHACTR2O75167 634 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 SIN3BO75182 1162 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 LDHBP07195 334 aaKnown RBP7.92□□□□□ -1.14
VPS39-209ENST00000568029 MAPK8P45983 427 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 VEGFBP49765 207 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 CTBSQ01459 385 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 ORC1Q13415 861 aa7.92□□□□□ -1.14
VPS39-209ENST00000568029 GAS6Q14393 721 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms