RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 SPTY2D1Q68D10 685 aaPredicted RBP18.48■□□□□ 0.55
CLN3-222ENST00000566083 ATF7IPQ6VMQ6 1270 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 CDAN1Q8IWY9 1227 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 ZFYVE28Q9HCC9 887 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 DAGLAQ9Y4D2 1042 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 TRIM17Q9Y577 477 aa18.48■□□□□ 0.55
CLN3-222ENST00000566083 CCL15-CCL14A0A0B4J2E2 113 aa18.47■□□□□ 0.55
CLN3-222ENST00000566083 SP3Q02447 781 aa18.47■□□□□ 0.55
CLN3-222ENST00000566083 MVPQ14764 893 aaKnown RBP18.47■□□□□ 0.55
CLN3-222ENST00000566083 CCL15Q16663 113 aa18.47■□□□□ 0.55
CLN3-222ENST00000566083 CCDC102BQ68D86 513 aa18.47■□□□□ 0.55
CLN3-222ENST00000566083 OTUD5Q96G74 571 aa18.47■□□□□ 0.55
CLN3-222ENST00000566083 PTPN18Q99952 460 aa18.47■□□□□ 0.55
CLN3-222ENST00000566083 PA2G4Q9UQ80 394 aaKnown RBP18.47■□□□□ 0.55
CLN3-222ENST00000566083 GNAI2P04899 355 aa18.46■□□□□ 0.55
CLN3-222ENST00000566083 PRDX5P30044 214 aa18.46■□□□□ 0.55
CLN3-222ENST00000566083 PHKA1P46020 1223 aa18.46■□□□□ 0.55
CLN3-222ENST00000566083 SNAPC2Q13487 334 aa18.46■□□□□ 0.55
CLN3-222ENST00000566083 CDC42EP5Q6NZY7 148 aa18.46■□□□□ 0.55
CLN3-222ENST00000566083 TRIM27P14373 513 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 PPATQ06203 517 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 PPIL2Q13356 520 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 TAF1CQ15572 869 aaPredicted RBP18.45■□□□□ 0.54
CLN3-222ENST00000566083 DIXDC1Q155Q3 683 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 OTOP1Q7RTM1 612 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 BRI3BPQ8WY22 251 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 OTOFQ9HC10 1997 aa18.45■□□□□ 0.54
CLN3-222ENST00000566083 SLC34A2O95436 690 aa18.44■□□□□ 0.54
CLN3-222ENST00000566083 FRAT1Q92837 279 aaPredicted RBP18.44■□□□□ 0.54
CLN3-222ENST00000566083 EFCC1Q9HA90 598 aa18.44■□□□□ 0.54
CLN3-222ENST00000566083 USP40Q9NVE5 1235 aa18.44■□□□□ 0.54
CLN3-222ENST00000566083 SNCAIPQ9Y6H5 919 aa18.44■□□□□ 0.54
CLN3-222ENST00000566083 A0A1B0GUL7 405 aa18.43■□□□□ 0.54
CLN3-222ENST00000566083 TIMM10P62072 90 aa18.43■□□□□ 0.54
CLN3-222ENST00000566083 DZIP1Q86YF9 867 aaKnown RBP18.43■□□□□ 0.54
CLN3-222ENST00000566083 FAM163AQ96GL9 167 aaPredicted RBP18.43■□□□□ 0.54
CLN3-222ENST00000566083 ENTPD3O75355 529 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 G3BP1Q13283 466 aaKnown RBP eCLIP18.42■□□□□ 0.54
CLN3-222ENST00000566083 ZKSCAN2Q63HK3 967 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 CNKSR2Q8WXI2 1034 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 ZKSCAN4Q969J2 545 aaPredicted RBP18.42■□□□□ 0.54
CLN3-222ENST00000566083 XAGE2Q96GT9 111 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 IDI2Q9BXS1 227 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 ZNF112Q9UJU3 913 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 PTPN22Q9Y2R2 807 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 GAKO14976 1311 aa18.42■□□□□ 0.54
CLN3-222ENST00000566083 IRF6O14896 467 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 ADORA1P30542 326 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 TCP10Q12799 353 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 TFCP2Q12800 502 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 RASGRF1Q13972 1273 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 GORABQ5T7V8 394 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 MIGA2Q7L4E1 593 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 CD99L2Q8TCZ2 262 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 ABCF2Q9UG63 623 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 AK9Q5TCS8 1911 aa18.41■□□□□ 0.54
CLN3-222ENST00000566083 MAP4K4O95819 1239 aaPredicted RBP18.4■□□□□ 0.54
CLN3-222ENST00000566083 KIF22Q14807 665 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 NOL9Q5SY16 702 aaKnown RBP18.4■□□□□ 0.54
CLN3-222ENST00000566083 ERICH6Q7L0X2 663 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 FAM43AQ8N2R8 423 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 NEUROD6Q96NK8 337 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 KIAA0100Q14667 2235 aaKnown RBP18.4■□□□□ 0.54
CLN3-222ENST00000566083 TLR2O60603 784 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 BCAR3O75815 825 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 GNRH1P01148 92 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 LDHCP07864 332 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 GSTO1P78417 241 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 NFIAQ12857 509 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 FAM198AQ9UFP1 575 aa18.4■□□□□ 0.54
CLN3-222ENST00000566083 INPP5BP32019 993 aa18.39■□□□□ 0.53
CLN3-222ENST00000566083 CLUAP1Q96AJ1 413 aa18.39■□□□□ 0.53
CLN3-222ENST00000566083 KCNH4Q9UQ05 1017 aa18.39■□□□□ 0.53
CLN3-222ENST00000566083 BTBD19C9JJ37 291 aa18.38■□□□□ 0.53
CLN3-222ENST00000566083 IGSF3O75054 1194 aa18.38■□□□□ 0.53
CLN3-222ENST00000566083 NPM3O75607 178 aaKnown RBP18.38■□□□□ 0.53
CLN3-222ENST00000566083 UQCRFS1P1P0C7P4 283 aa18.38■□□□□ 0.53
CLN3-222ENST00000566083 ANKRD23Q86SG2 305 aa18.38■□□□□ 0.53
CLN3-222ENST00000566083 NBPF11Q86T75 865 aa18.38■□□□□ 0.53
CLN3-222ENST00000566083 MYH2Q9UKX2 1941 aa18.37■□□□□ 0.53
CLN3-222ENST00000566083 CXCL11O14625 94 aa18.37■□□□□ 0.53
CLN3-222ENST00000566083 RGS3P49796 1198 aa18.37■□□□□ 0.53
CLN3-222ENST00000566083 HNRNPUQ00839 825 aaKnown RBP eCLIP18.37■□□□□ 0.53
CLN3-222ENST00000566083 ZSCAN29Q8IWY8 852 aaPredicted RBP18.37■□□□□ 0.53
CLN3-222ENST00000566083 FTSJ3Q8IY81 847 aaKnown RBP18.37■□□□□ 0.53
CLN3-222ENST00000566083 SPATA5Q8NB90 893 aa18.37■□□□□ 0.53
CLN3-222ENST00000566083 ARMC5Q96C12 935 aa18.37■□□□□ 0.53
CLN3-222ENST00000566083 GPR108Q9NPR9 543 aa18.37■□□□□ 0.53
CLN3-222ENST00000566083 TNRC18O15417 2968 aaPredicted RBP18.37■□□□□ 0.53
CLN3-222ENST00000566083 MROH7-TTC4A0A0A0MT08 1334 aa18.36■□□□□ 0.53
CLN3-222ENST00000566083 GPR75-ASB3A0A0A6YYF3 556 aa18.36■□□□□ 0.53
CLN3-222ENST00000566083 ARID4AP29374 1257 aaPredicted RBP18.36■□□□□ 0.53
CLN3-222ENST00000566083 PRMT2P55345 433 aa18.36■□□□□ 0.53
CLN3-222ENST00000566083 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.36■□□□□ 0.53
CLN3-222ENST00000566083 PICK1Q9NRD5 415 aa18.36■□□□□ 0.53
CLN3-222ENST00000566083 PNMA6EA0A0J9YXQ4 647 aa18.35■□□□□ 0.53
CLN3-222ENST00000566083 BTDP43251 543 aa18.35■□□□□ 0.53
CLN3-222ENST00000566083 MAP3K10Q02779 954 aa18.35■□□□□ 0.53
CLN3-222ENST00000566083 TMEM57Q8N5G2 664 aa18.35■□□□□ 0.53
CLN3-222ENST00000566083 HMG20BQ9P0W2 317 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms