RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 MYO5AQ9Y4I1 1855 aaKnown RBP22.66■■□□□ 1.22
CLN3-221ENST00000566057 ARID4AP29374 1257 aaPredicted RBP22.65■■□□□ 1.22
CLN3-221ENST00000566057 TM4SF4P48230 202 aa22.65■■□□□ 1.22
CLN3-221ENST00000566057 SPATA5Q8NB90 893 aa22.65■■□□□ 1.22
CLN3-221ENST00000566057 DBNDD2Q9BQY9 259 aa22.65■■□□□ 1.22
CLN3-221ENST00000566057 UNCXA6NJT0 531 aa22.64■■□□□ 1.21
CLN3-221ENST00000566057 MCAMP43121 646 aa22.64■■□□□ 1.21
CLN3-221ENST00000566057 TBC1D9Q6ZT07 1266 aa22.64■■□□□ 1.21
CLN3-221ENST00000566057 ZNF384Q8TF68 577 aa22.64■■□□□ 1.21
CLN3-221ENST00000566057 NFIAQ12857 509 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 C20orf194Q5TEA3 1177 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 ANKRD13AQ8IZ07 590 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 WNK4Q96J92 1243 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 ZBTB40Q9NUA8 1239 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 USP40Q9NVE5 1235 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 DDX19BQ9UMR2 479 aa22.63■■□□□ 1.21
CLN3-221ENST00000566057 GAKO14976 1311 aa22.62■■□□□ 1.21
CLN3-221ENST00000566057 CAPN15O75808 1086 aa22.62■■□□□ 1.21
CLN3-221ENST00000566057 GJA5P36382 358 aa22.62■■□□□ 1.21
CLN3-221ENST00000566057 TCP10Q12799 353 aa22.62■■□□□ 1.21
CLN3-221ENST00000566057 SPTY2D1Q68D10 685 aaPredicted RBP22.62■■□□□ 1.21
CLN3-221ENST00000566057 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.62■■□□□ 1.21
CLN3-221ENST00000566057 DZIP1Q86YF9 867 aaKnown RBP22.62■■□□□ 1.21
CLN3-221ENST00000566057 EXOC6BQ9Y2D4 811 aa22.62■■□□□ 1.21
CLN3-221ENST00000566057 UQCRFS1P1P0C7P4 283 aa22.61■■□□□ 1.21
CLN3-221ENST00000566057 MECOMQ03112 1051 aa22.61■■□□□ 1.21
CLN3-221ENST00000566057 ERICH6Q7L0X2 663 aa22.61■■□□□ 1.21
CLN3-221ENST00000566057 FAM151AQ8WW52 585 aa22.61■■□□□ 1.21
CLN3-221ENST00000566057 FAM163AQ96GL9 167 aaPredicted RBP22.61■■□□□ 1.21
CLN3-221ENST00000566057 FAM198AQ9UFP1 575 aa22.61■■□□□ 1.21
CLN3-221ENST00000566057 ZBTB48P10074 688 aaPredicted RBP22.6■■□□□ 1.21
CLN3-221ENST00000566057 MAP3K9P80192 1104 aa22.6■■□□□ 1.21
CLN3-221ENST00000566057 ZFPM1Q8IX07 1006 aa22.6■■□□□ 1.21
CLN3-221ENST00000566057 SIRT2Q8IXJ6 389 aa22.6■■□□□ 1.21
CLN3-221ENST00000566057 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.6■■□□□ 1.21
CLN3-221ENST00000566057 EAF2Q96CJ1 260 aaPredicted RBP22.6■■□□□ 1.21
CLN3-221ENST00000566057 CCDC8Q9H0W5 538 aaPredicted RBP22.6■■□□□ 1.21
CLN3-221ENST00000566057 ELP3Q9H9T3 547 aa22.6■■□□□ 1.21
CLN3-221ENST00000566057 SNRKQ9NRH2 765 aa22.6■■□□□ 1.21
CLN3-221ENST00000566057 TLR7Q9NYK1 1049 aaKnown RBP22.6■■□□□ 1.21
CLN3-221ENST00000566057 TBC1D8O95759 1140 aa22.59■■□□□ 1.21
CLN3-221ENST00000566057 SREBF2Q12772 1141 aa22.59■■□□□ 1.21
CLN3-221ENST00000566057 VGLL4Q14135 290 aa22.59■■□□□ 1.21
CLN3-221ENST00000566057 CCDC158Q5M9N0 1113 aa22.59■■□□□ 1.21
CLN3-221ENST00000566057 TTC39AQ5SRH9 613 aa22.59■■□□□ 1.21
CLN3-221ENST00000566057 CNKSR2Q8WXI2 1034 aa22.59■■□□□ 1.21
CLN3-221ENST00000566057 DBNLQ9UJU6 430 aaKnown RBP22.59■■□□□ 1.21
CLN3-221ENST00000566057 RPAP1Q9BWH6 1393 aaPredicted RBP22.59■■□□□ 1.21
CLN3-221ENST00000566057 PDE3AQ14432 1141 aa22.58■■□□□ 1.21
CLN3-221ENST00000566057 MIGA2Q7L4E1 593 aa22.58■■□□□ 1.21
CLN3-221ENST00000566057 SLF2Q8IX21 1173 aa22.58■■□□□ 1.21
CLN3-221ENST00000566057 RPAP2Q8IXW5 612 aaPredicted RBP22.58■■□□□ 1.21
CLN3-221ENST00000566057 NSUN4Q96CB9 384 aaKnown RBP22.58■■□□□ 1.21
CLN3-221ENST00000566057 MROH7-TTC4A0A0A0MT08 1334 aa22.57■■□□□ 1.2
CLN3-221ENST00000566057 DOCK2Q92608 1830 aa22.57■■□□□ 1.2
CLN3-221ENST00000566057 MANSC4A6NHS7 340 aaPredicted RBP22.57■■□□□ 1.2
CLN3-221ENST00000566057 BTDP43251 543 aa22.57■■□□□ 1.2
CLN3-221ENST00000566057 OPTNQ96CV9 577 aa22.57■■□□□ 1.2
CLN3-221ENST00000566057 GPR75-ASB3A0A0A6YYF3 556 aa22.56■■□□□ 1.2
CLN3-221ENST00000566057 RGS3P49796 1198 aa22.56■■□□□ 1.2
CLN3-221ENST00000566057 ZKSCAN4Q969J2 545 aaPredicted RBP22.56■■□□□ 1.2
CLN3-221ENST00000566057 HOOK2Q96ED9 719 aa22.56■■□□□ 1.2
CLN3-221ENST00000566057 ZNF512BQ96KM6 892 aaPredicted RBP22.56■■□□□ 1.2
CLN3-221ENST00000566057 IDI2Q9BXS1 227 aa22.56■■□□□ 1.2
CLN3-221ENST00000566057 R3HDMLQ9H3Y0 253 aa22.56■■□□□ 1.2
CLN3-221ENST00000566057 RAI14Q9P0K7 980 aa22.56■■□□□ 1.2
CLN3-221ENST00000566057 RFX7Q2KHR2 1363 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 WDHD1O75717 1129 aaPredicted RBP22.55■■□□□ 1.2
CLN3-221ENST00000566057 CYP2E1P05181 493 aaPredicted RBP22.55■■□□□ 1.2
CLN3-221ENST00000566057 INHBEP58166 350 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 IFNL1Q8IU54 200 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 ERC1Q8IUD2 1116 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 WRNIP1Q96S55 665 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 LRP2BPQ9P2M1 347 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 CSADQ9Y600 493 aa22.55■■□□□ 1.2
CLN3-221ENST00000566057 CDK5RAP2Q96SN8 1893 aa22.54■■□□□ 1.2
CLN3-221ENST00000566057 IGF2BP3O00425 579 aaKnown RBP eCLIP22.54■■□□□ 1.2
CLN3-221ENST00000566057 RHBDL3P58872 404 aa22.54■■□□□ 1.2
CLN3-221ENST00000566057 DCAF15Q66K64 600 aa22.54■■□□□ 1.2
CLN3-221ENST00000566057 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.54■■□□□ 1.2
CLN3-221ENST00000566057 ABHD8Q96I13 439 aa22.54■■□□□ 1.2
CLN3-221ENST00000566057 IL1RAPL2Q9NP60 686 aa22.54■■□□□ 1.2
CLN3-221ENST00000566057 DDX4Q9NQI0 724 aaKnown RBP22.54■■□□□ 1.2
CLN3-221ENST00000566057 SNCAIPQ9Y6H5 919 aa22.54■■□□□ 1.2
CLN3-221ENST00000566057 MAST2Q6P0Q8 1798 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 ENTPD3O75355 529 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 LDHCP07864 332 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 ZAP70P43403 619 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 GSTO1P78417 241 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 SH3BP5LQ7L8J4 393 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 AACSQ86V21 672 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 RHPN1Q8TCX5 695 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 MS4A4AQ96JQ5 239 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 PTPN18Q99952 460 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 ZNF341Q9BYN7 854 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 MCOLN1Q9GZU1 580 aa22.53■■□□□ 1.2
CLN3-221ENST00000566057 CHMP4BQ9H444 224 aaKnown RBP22.53■■□□□ 1.2
CLN3-221ENST00000566057 APBB1O00213 710 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 HMMRO75330 724 aa22.52■■□□□ 1.2
CLN3-221ENST00000566057 INPP5BP32019 993 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms