RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 SENP6Q9GZR1 1112 aaPredicted RBP11.9□□□□□ -0.5
SMPD3-206ENST00000566009 PRDM12Q9H4Q4 367 aa11.9□□□□□ -0.5
SMPD3-206ENST00000566009 LTBP2Q14767 1821 aa11.9□□□□□ -0.5
SMPD3-206ENST00000566009 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.89□□□□□ -0.51
SMPD3-206ENST00000566009 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.89□□□□□ -0.51
SMPD3-206ENST00000566009 TCP10L2B9ZVM9 353 aa11.89□□□□□ -0.51
SMPD3-206ENST00000566009 ATP5J2-PTCD1G3V325 749 aa11.89□□□□□ -0.51
SMPD3-206ENST00000566009 TIFAQ96CG3 184 aa11.89□□□□□ -0.51
SMPD3-206ENST00000566009 RSPH6AQ9H0K4 717 aa11.89□□□□□ -0.51
SMPD3-206ENST00000566009 TDRD3Q9H7E2 651 aaKnown RBP11.89□□□□□ -0.51
SMPD3-206ENST00000566009 MINPP1Q9UNW1 487 aa11.89□□□□□ -0.51
SMPD3-206ENST00000566009 IGFBP4P22692 258 aa11.88□□□□□ -0.51
SMPD3-206ENST00000566009 ATN1P54259 1190 aaPredicted RBP11.88□□□□□ -0.51
SMPD3-206ENST00000566009 CCDC152Q4G0S7 254 aa11.88□□□□□ -0.51
SMPD3-206ENST00000566009 MAP3K21Q5TCX8 1036 aa11.88□□□□□ -0.51
SMPD3-206ENST00000566009 CCDC85AQ96PX6 553 aaPredicted RBP11.88□□□□□ -0.51
SMPD3-206ENST00000566009 KCNH6Q9H252 994 aa11.88□□□□□ -0.51
SMPD3-206ENST00000566009 KNSTRNQ9Y448 316 aa11.88□□□□□ -0.51
SMPD3-206ENST00000566009 KLRK1P26718 216 aa11.87□□□□□ -0.51
SMPD3-206ENST00000566009 TNNI2P48788 182 aa11.87□□□□□ -0.51
SMPD3-206ENST00000566009 LHX8Q68G74 356 aa11.87□□□□□ -0.51
SMPD3-206ENST00000566009 UIMC1Q96RL1 719 aa11.87□□□□□ -0.51
SMPD3-206ENST00000566009 RTP1P59025 263 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 TRIB2Q92519 343 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 PHOX2BQ99453 314 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 CD209Q9NNX6 404 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 PRDM5Q9NQX1 630 aaPredicted RBP11.86□□□□□ -0.51
SMPD3-206ENST00000566009 GJD2Q9UKL4 321 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 LEMD3Q9Y2U8 911 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 MAST2Q6P0Q8 1798 aa11.86□□□□□ -0.51
SMPD3-206ENST00000566009 PRKAR2AP13861 404 aaKnown RBP11.85□□□□□ -0.51
SMPD3-206ENST00000566009 INPP5BP32019 993 aa11.85□□□□□ -0.51
SMPD3-206ENST00000566009 AMER1Q5JTC6 1135 aaPredicted RBP11.85□□□□□ -0.51
SMPD3-206ENST00000566009 CACNA1GO43497 2377 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 MYO9BQ13459 2157 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 TLL1O43897 1013 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 KRT37O76014 449 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 EPHB4P54760 987 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 ANKRD13CQ8N6S4 541 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 BSDC1Q9NW68 430 aaPredicted RBP11.84□□□□□ -0.51
SMPD3-206ENST00000566009 ATP11BQ9Y2G3 1177 aa11.84□□□□□ -0.51
SMPD3-206ENST00000566009 CXCL11O14625 94 aa11.83□□□□□ -0.52
SMPD3-206ENST00000566009 ERC2O15083 957 aa11.83□□□□□ -0.52
SMPD3-206ENST00000566009 HSP90B1P14625 803 aaKnown RBP11.83□□□□□ -0.52
SMPD3-206ENST00000566009 FKBP1AP62942 108 aaKnown RBP11.83□□□□□ -0.52
SMPD3-206ENST00000566009 PLBD2Q8NHP8 589 aa11.83□□□□□ -0.52
SMPD3-206ENST00000566009 SMCR8Q8TEV9 937 aaPredicted RBP11.83□□□□□ -0.52
SMPD3-206ENST00000566009 PDE8AO60658 829 aa11.82□□□□□ -0.52
SMPD3-206ENST00000566009 CCND3P30281 292 aaPredicted RBP11.82□□□□□ -0.52
SMPD3-206ENST00000566009 TRIM28Q13263 835 aaKnown RBP11.82□□□□□ -0.52
SMPD3-206ENST00000566009 FASTKD5Q7L8L6 764 aaKnown RBP11.82□□□□□ -0.52
SMPD3-206ENST00000566009 DZIP1LQ8IYY4 767 aaKnown RBP11.82□□□□□ -0.52
SMPD3-206ENST00000566009 CDC5LQ99459 802 aaKnown RBP11.82□□□□□ -0.52
SMPD3-206ENST00000566009 CD320Q9NPF0 282 aa11.82□□□□□ -0.52
SMPD3-206ENST00000566009 ARAP2Q8WZ64 1704 aa11.82□□□□□ -0.52
SMPD3-206ENST00000566009 ZDBF2Q9HCK1 2354 aa11.82□□□□□ -0.52
SMPD3-206ENST00000566009 XIRP2A4UGR9 3374 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 DNAH12Q6ZR08 3092 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 TRIM43BA6NCK2 446 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 CYP2B6P20813 491 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 PBX2P40425 430 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 EIF4G2P78344 907 aaKnown RBP eCLIP11.81□□□□□ -0.52
SMPD3-206ENST00000566009 CACNB2Q08289 660 aaPredicted RBP11.81□□□□□ -0.52
SMPD3-206ENST00000566009 DCAF15Q66K64 600 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 SH3RF1Q7Z6J0 888 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 TRIM43Q96BQ3 446 aaPredicted RBP11.81□□□□□ -0.52
SMPD3-206ENST00000566009 HOOK2Q96ED9 719 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 ZNF341Q9BYN7 854 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 SLC45A1Q9Y2W3 748 aa11.81□□□□□ -0.52
SMPD3-206ENST00000566009 SKIV2LQ15477 1246 aaKnown RBP11.8□□□□□ -0.52
SMPD3-206ENST00000566009 FAM110CQ1W6H9 321 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 MIGA2Q7L4E1 593 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 MICALL1Q8N3F8 863 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 PBX4Q9BYU1 374 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 PDLIM7Q9NR12 457 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 SERPINA10Q9UK55 444 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 JAG2Q9Y219 1238 aa11.8□□□□□ -0.52
SMPD3-206ENST00000566009 ITGB8P26012 769 aa11.79□□□□□ -0.52
SMPD3-206ENST00000566009 CSPP1Q1MSJ5 1256 aa11.79□□□□□ -0.52
SMPD3-206ENST00000566009 SLC39A5Q6ZMH5 540 aa11.79□□□□□ -0.52
SMPD3-206ENST00000566009 GADL1Q6ZQY3 521 aa11.79□□□□□ -0.52
SMPD3-206ENST00000566009 CCDC129Q6ZRS4 1044 aa11.79□□□□□ -0.52
SMPD3-206ENST00000566009 HERVK_113Q902F9 699 aa11.79□□□□□ -0.52
SMPD3-206ENST00000566009 JARID2Q92833 1246 aaPredicted RBP11.79□□□□□ -0.52
SMPD3-206ENST00000566009 A0A0G2JLL6 359 aaPredicted RBP11.78□□□□□ -0.52
SMPD3-206ENST00000566009 GRXCR1A8MXD5 290 aa11.78□□□□□ -0.52
SMPD3-206ENST00000566009 CACNB3P54284 484 aa11.78□□□□□ -0.52
SMPD3-206ENST00000566009 ERMP1Q7Z2K6 904 aa11.78□□□□□ -0.52
SMPD3-206ENST00000566009 PRRT2Q7Z6L0 340 aaPredicted RBP11.78□□□□□ -0.52
SMPD3-206ENST00000566009 ZNF112Q9UJU3 913 aa11.78□□□□□ -0.52
SMPD3-206ENST00000566009 TTF2Q9UNY4 1162 aaKnown RBP11.78□□□□□ -0.52
SMPD3-206ENST00000566009 CACNA1BQ00975 2339 aa11.77□□□□□ -0.52
SMPD3-206ENST00000566009 DNM1LO00429 736 aa11.77□□□□□ -0.53
SMPD3-206ENST00000566009 XRCC5P13010 732 aaKnown RBP11.77□□□□□ -0.53
SMPD3-206ENST00000566009 IL1R1P14778 569 aa11.77□□□□□ -0.53
SMPD3-206ENST00000566009 TRIM60Q495X7 471 aa11.77□□□□□ -0.53
SMPD3-206ENST00000566009 RPAP1Q9BWH6 1393 aaPredicted RBP11.77□□□□□ -0.53
SMPD3-206ENST00000566009 CFAP54Q96N23 3096 aa11.76□□□□□ -0.53
SMPD3-206ENST00000566009 PCCAP05165 728 aaPredicted RBP11.76□□□□□ -0.53
SMPD3-206ENST00000566009 CRKP46108 304 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms