RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ZGPATQ8N5A5 531 aaKnown RBP21.36■■□□□ 1.01
VPS9D1-203ENST00000563798 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.36■■□□□ 1.01
VPS9D1-203ENST00000563798 GNAI2P04899 355 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 TIMM10P62072 90 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 CRHR2Q13324 411 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 DCAF15Q66K64 600 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 ERO1BQ86YB8 467 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 CNKSR2Q8WXI2 1034 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 BRI3BPQ8WY22 251 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 SNCAIPQ9Y6H5 919 aa21.35■■□□□ 1.01
VPS9D1-203ENST00000563798 A0A1B0GUL7 405 aa21.34■■□□□ 1.01
VPS9D1-203ENST00000563798 TNNQ9UQP3 1299 aa21.34■■□□□ 1.01
VPS9D1-203ENST00000563798 GAKO14976 1311 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 TFCP2Q12800 502 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 RASGRF1Q13972 1273 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 MVPQ14764 893 aaKnown RBP21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 FRAT1Q92837 279 aaPredicted RBP21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 FAM163AQ96GL9 167 aaPredicted RBP21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 XAGE2Q96GT9 111 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 WRNIP1Q96S55 665 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 ZNF341Q9BYN7 854 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 ZNF112Q9UJU3 913 aa21.33■■□□□ 1.01
VPS9D1-203ENST00000563798 CCL15-CCL14A0A0B4J2E2 113 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 NFIAQ12857 509 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 CCL15Q16663 113 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 ZKSCAN2Q63HK3 967 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 MIER1Q8N108 512 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 OTUD5Q96G74 571 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 ERO1AQ96HE7 468 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 ZCCHC17Q9NP64 241 aaKnown RBP21.32■■□□□ 1
VPS9D1-203ENST00000563798 FAM198AQ9UFP1 575 aa21.32■■□□□ 1
VPS9D1-203ENST00000563798 SOX10P56693 466 aa21.31■■□□□ 1
VPS9D1-203ENST00000563798 OTOP1Q7RTM1 612 aa21.31■■□□□ 1
VPS9D1-203ENST00000563798 ZKSCAN4Q969J2 545 aaPredicted RBP21.31■■□□□ 1
VPS9D1-203ENST00000563798 IDI2Q9BXS1 227 aa21.31■■□□□ 1
VPS9D1-203ENST00000563798 USP40Q9NVE5 1235 aa21.31■■□□□ 1
VPS9D1-203ENST00000563798 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.31■■□□□ 1
VPS9D1-203ENST00000563798 PNMA6EA0A0J9YXQ4 647 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 CETPP11597 493 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 SP3Q02447 781 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 PPATQ06203 517 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 PPIL2Q13356 520 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 SPTY2D1Q68D10 685 aaPredicted RBP21.3■■□□□ 1
VPS9D1-203ENST00000563798 SLF2Q8IX21 1173 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 CLUAP1Q96AJ1 413 aa21.3■■□□□ 1
VPS9D1-203ENST00000563798 RFX7Q2KHR2 1363 aa21.29■■□□□ 1
VPS9D1-203ENST00000563798 ENTPD3O75355 529 aa21.29■■□□□ 1
VPS9D1-203ENST00000563798 HNRNPUQ00839 825 aaKnown RBP eCLIP21.29■■□□□ 1
VPS9D1-203ENST00000563798 MIGA2Q7L4E1 593 aa21.29■■□□□ 1
VPS9D1-203ENST00000563798 FAM43AQ8N2R8 423 aa21.29■■□□□ 1
VPS9D1-203ENST00000563798 TMEM57Q8N5G2 664 aa21.29■■□□□ 1
VPS9D1-203ENST00000563798 TRIM17Q9Y577 477 aa21.29■■□□□ 1
VPS9D1-203ENST00000563798 IRF6O14896 467 aa21.28■■□□□ 1
VPS9D1-203ENST00000563798 TCP10Q12799 353 aa21.28■■□□□ 1
VPS9D1-203ENST00000563798 SNAPC2Q13487 334 aa21.28■■□□□ 1
VPS9D1-203ENST00000563798 POLA2Q14181 598 aa21.28■■□□□ 1
VPS9D1-203ENST00000563798 NOL9Q5SY16 702 aaKnown RBP21.28■■□□□ 1
VPS9D1-203ENST00000563798 ZFYVE28Q9HCC9 887 aa21.28■■□□□ 1
VPS9D1-203ENST00000563798 ATRNL1Q5VV63 1379 aa21.27■■□□□ 1
VPS9D1-203ENST00000563798 TNRC18O15417 2968 aaPredicted RBP21.27■■□□□ 1
VPS9D1-203ENST00000563798 INPP5BP32019 993 aa21.27■■□□□ 1
VPS9D1-203ENST00000563798 MAP3K10Q02779 954 aa21.27■■□□□ 1
VPS9D1-203ENST00000563798 G3BP1Q13283 466 aaKnown RBP eCLIP21.27■■□□□ 1
VPS9D1-203ENST00000563798 TAF1CQ15572 869 aaPredicted RBP21.27■■□□□ 1
VPS9D1-203ENST00000563798 DIEXFQ68CQ4 756 aaKnown RBP21.27■■□□□ 1
VPS9D1-203ENST00000563798 DZIP1Q86YF9 867 aaKnown RBP21.27■■□□□ 1
VPS9D1-203ENST00000563798 GPR108Q9NPR9 543 aa21.27■■□□□ 1
VPS9D1-203ENST00000563798 ARID4AP29374 1257 aaPredicted RBP21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 ZFPM1Q8IX07 1006 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 CD99L2Q8TCZ2 262 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 SSH3Q8TE77 659 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 NEUROD6Q96NK8 337 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 HMG20BQ9P0W2 317 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 ABCF2Q9UG63 623 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 KCNH4Q9UQ05 1017 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 PTPN22Q9Y2R2 807 aa21.26■□□□□ 0.99
VPS9D1-203ENST00000563798 MYH2Q9UKX2 1941 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 GPR75-ASB3A0A0A6YYF3 556 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 NPM3O75607 178 aaKnown RBP21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 WDHD1O75717 1129 aaPredicted RBP21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 RGS3P49796 1198 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 ATP8B2P98198 1209 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 ERICH6Q7L0X2 663 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 SPATA5Q8NB90 893 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 EFCC1Q9HA90 598 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 MROH7-TTC4A0A0A0MT08 1334 aa21.25■□□□□ 0.99
VPS9D1-203ENST00000563798 HTTP42858 3142 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 PHF20L1A8MW92 1017 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 BTBD19C9JJ37 291 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 TLR2O60603 784 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 MAP4K4O95819 1239 aaPredicted RBP21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 CAP1Q01518 475 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 MECOMQ03112 1051 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 ARHGEF6Q15052 776 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 ZNF384Q8TF68 577 aa21.24■□□□□ 0.99
VPS9D1-203ENST00000563798 RHBDL3P58872 404 aa21.23■□□□□ 0.99
VPS9D1-203ENST00000563798 SH3BP5LQ7L8J4 393 aa21.23■□□□□ 0.99
VPS9D1-203ENST00000563798 ZBTB7BO15156 539 aaPredicted RBP21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 UQCRFS1P1P0C7P4 283 aa21.22■□□□□ 0.99
VPS9D1-203ENST00000563798 BTDP43251 543 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms