RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 ADCK5Q3MIX3 580 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 TSGA10IPQ3SY00 556 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 RNF20Q5VTR2 975 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 SDR42E1Q8WUS8 393 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 MYH8P13535 1937 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 ZMYM6O95789 1325 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 GPR75-ASB3A0A0A6YYF3 556 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 PSMD14O00487 310 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 VIL1P09327 827 aaKnown RBP12.13□□□□□ -0.47
SMG1-208ENST00000563448 BTDP43251 543 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 SCNN1DP51172 638 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 KIAA0825Q8IV33 1275 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 SLF2Q8IX21 1173 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 CTNNA3Q9UI47 895 aa12.13□□□□□ -0.47
SMG1-208ENST00000563448 RPAP1Q9BWH6 1393 aaPredicted RBP12.13□□□□□ -0.47
SMG1-208ENST00000563448 BAG3O95817 575 aa12.12□□□□□ -0.47
SMG1-208ENST00000563448 ZKSCAN1P17029 563 aaPredicted RBP12.12□□□□□ -0.47
SMG1-208ENST00000563448 RSBN1LQ6PCB5 846 aaPredicted RBP12.12□□□□□ -0.47
SMG1-208ENST00000563448 ARHGAP27Q6ZUM4 889 aa12.12□□□□□ -0.47
SMG1-208ENST00000563448 SH3RF3Q8TEJ3 882 aaPredicted RBP12.12□□□□□ -0.47
SMG1-208ENST00000563448 JDP2Q8WYK2 163 aa12.12□□□□□ -0.47
SMG1-208ENST00000563448 DAGLAQ9Y4D2 1042 aa12.12□□□□□ -0.47
SMG1-208ENST00000563448 YBX3P16989 372 aaKnown RBP eCLIP12.11□□□□□ -0.47
SMG1-208ENST00000563448 CXCL9Q07325 125 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 HHIPL2Q6UWX4 724 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 DDRGK1Q96HY6 314 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 NOL10Q9BSC4 688 aaKnown RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 MRIQ9BWK5 157 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 CRNKL1Q9BZJ0 848 aaKnown RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 GOLGB1Q14789 3259 aaKnown RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 CD2BP2O95400 341 aaKnown RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 CRKP46108 304 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 HAND2P61296 217 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 COL9A3Q14050 684 aaPredicted RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 IMMTQ16891 758 aaKnown RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 JAKMIP1Q96N16 626 aaKnown RBP12.11□□□□□ -0.47
SMG1-208ENST00000563448 GMLQ99445 158 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 TM6SF1Q9BZW5 370 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 NAPBQ9H115 298 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 MYO3BQ8WXR4 1341 aa12.11□□□□□ -0.47
SMG1-208ENST00000563448 ZNF213O14771 459 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 TDO2P48775 406 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 RHBDL3P58872 404 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 HDLBPQ00341 1268 aaKnown RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 CIAPIN1Q6FI81 312 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 TEKT1Q969V4 418 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 IPO9Q96P70 1041 aaKnown RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 UPF3BQ9BZI7 483 aaKnown RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 NACAP1Q9BZK3 213 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 NBPF3Q9H094 633 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 PCDHAC2Q9Y5I4 1007 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 E7EWF7 191 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 FZD9O00144 591 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 CPA1P15085 419 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 CASTP20810 708 aaKnown RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 NEK4P51957 841 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 GIMAP6Q6P9H5 292 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 CERS3Q8IU89 383 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 SNX21Q969T3 373 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 TBC1D2Q9BYX2 928 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 ZSWIM6Q9HCJ5 1215 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 DCP1AQ9NPI6 582 aaPredicted RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 ATP8A2Q9NTI2 1148 aa12.1□□□□□ -0.47
SMG1-208ENST00000563448 MKRN1Q9UHC7 482 aaKnown RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 ZBTB12Q9Y330 459 aaPredicted RBP12.1□□□□□ -0.47
SMG1-208ENST00000563448 SIPA1L1O43166 1804 aa12.09□□□□□ -0.47
SMG1-208ENST00000563448 KRT32Q14532 448 aa12.09□□□□□ -0.47
SMG1-208ENST00000563448 APOBEC3HQ6NTF7 200 aaKnown RBP12.09□□□□□ -0.47
SMG1-208ENST00000563448 ZDHHC15Q96MV8 337 aa12.09□□□□□ -0.47
SMG1-208ENST00000563448 SERPINA10Q9UK55 444 aa12.09□□□□□ -0.47
SMG1-208ENST00000563448 PLCG2P16885 1265 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 LMNB1P20700 586 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 PSMA5P28066 241 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 USP5P45974 858 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 TNIP1Q15025 636 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 TBC1D10CQ8IV04 446 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 TEX11Q8IYF3 940 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 AGBL3Q8NEM8 1001 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 TGFBRAP1Q8WUH2 860 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 TTC14Q96N46 770 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 NEK1Q96PY6 1258 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 TACC3Q9Y6A5 838 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 CTDSPL2Q05D32 466 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 PPARAQ07869 468 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 CTR9Q6PD62 1173 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 RUFY3Q7L099 469 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 USP40Q9NVE5 1235 aa12.08□□□□□ -0.48
SMG1-208ENST00000563448 CYP2D7A0A087X1C5 515 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 MINDY4BA8MYZ0 360 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 SMIM22K7EJ46 135 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 ST18O60284 1047 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 SLC4A3P48751 1232 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 RBM5P52756 815 aaKnown RBP eCLIP12.07□□□□□ -0.48
SMG1-208ENST00000563448 EIF6P56537 245 aaKnown RBP12.07□□□□□ -0.48
SMG1-208ENST00000563448 CFAP100Q494V2 611 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 CDC42EP5Q6NZY7 148 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 BLOC1S2Q6QNY1 142 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 MAPKAPK5Q8IW41 473 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 CYP46A1Q9Y6A2 500 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms