RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GSTA2P09210 222 aa7□□□□□ -1.29
CLK3-212ENST00000563418 CHRM1P11229 460 aaPredicted RBP7□□□□□ -1.29
CLK3-212ENST00000563418 HDGFP51858 240 aaKnown RBP7□□□□□ -1.29
CLK3-212ENST00000563418 LCA5Q86VQ0 697 aa7□□□□□ -1.29
CLK3-212ENST00000563418 STAMBPL1Q96FJ0 436 aa7□□□□□ -1.29
CLK3-212ENST00000563418 LRRIQ3A6PVS8 624 aaPredicted RBP7□□□□□ -1.29
CLK3-212ENST00000563418 OPHN1O60890 802 aa7□□□□□ -1.29
CLK3-212ENST00000563418 HNRNPCP07910 306 aaKnown RBP eCLIP7□□□□□ -1.29
CLK3-212ENST00000563418 TUBB6Q9BUF5 446 aa7□□□□□ -1.29
CLK3-212ENST00000563418 SCINQ9Y6U3 715 aa7□□□□□ -1.29
CLK3-212ENST00000563418 GNPTABQ3T906 1256 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 UHRF1BP1Q6BDS2 1440 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 RGL1Q9NZL6 768 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 UTP11Q9Y3A2 253 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 ZNF644Q9H582 1327 aaPredicted RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 MAP3K5Q99683 1374 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 ABTB1Q969K4 478 aaPredicted RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 PPANQ9NQ55 473 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 CHGBP05060 677 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 LLPHQ9BRT6 129 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 RBM42Q9BTD8 480 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 AKAP2Q9Y2D5 859 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 ARHGEF2Q92974 986 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 GADD45BO75293 160 aaPredicted RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 ZRANB2O95218 330 aaKnown RBP eCLIP6.99□□□□□ -1.29
CLK3-212ENST00000563418 HNRNPH1P31943 449 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 NLRP12P59046 1061 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 MRPS25P82663 173 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 IGSF22Q8N9C0 903 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 ZNF483Q8TF39 744 aaPredicted RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 ATP2A1O14983 1001 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 NEK1Q96PY6 1258 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.99□□□□□ -1.293e-8■□□□□ 10.6
CLK3-212ENST00000563418 NDC80O14777 642 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 APBB1IPQ7Z5R6 666 aaPredicted RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 UBAC1Q9BSL1 405 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 SPTLC2O15270 562 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 PRPF4BQ13523 1007 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 TDRD12Q587J7 1177 aaKnown RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 OSBPL1AQ9BXW6 950 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 SIL1Q9H173 461 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 ZBTB40Q9NUA8 1239 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 STOML1Q9UBI4 398 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 ANGPTL2Q9UKU9 493 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 HDAC9Q9UKV0 1011 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 IKBKGQ9Y6K9 419 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 POLR3AO14802 1390 aaPredicted RBP6.99□□□□□ -1.29
CLK3-212ENST00000563418 KIF24Q5T7B8 1368 aa6.99□□□□□ -1.29
CLK3-212ENST00000563418 ACRBPQ8NEB7 543 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 PIP4K2CQ8TBX8 421 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 NUP58Q9BVL2 599 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 BMP2KQ9NSY1 1161 aaPredicted RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 PARP2Q9UGN5 583 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 YEATS2Q9ULM3 1422 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 TMPOP42166 694 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 INAQ16352 499 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 TSPYL4Q9UJ04 414 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 MAP3K7O43318 606 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 TAF7Q15545 349 aaPredicted RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 ARHGAP22Q7Z5H3 698 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 HNRNPLLQ8WVV9 542 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 DCTPP1Q9H773 170 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 MIEF2Q96C03 454 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 HAUS4Q9H6D7 363 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 NCOA3Q9Y6Q9 1424 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 TARSL2A2RTX5 802 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 CTNNA1P35221 906 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 PPP1R2P41236 205 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 NOP2P46087 812 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 ATXN2Q99700 1313 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 ARHGAP10A1A4S6 786 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 ATP2A2P16615 1042 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 MLKLQ8NB16 471 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 LEO1Q8WVC0 666 aaPredicted RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 WWC3Q9ULE0 1092 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 NR1D1P20393 614 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 PDE1AP54750 535 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 PDE1CQ14123 709 aaPredicted RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 SLC44A4Q53GD3 710 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 CFAP157Q5JU67 520 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 HHATQ5VTY9 493 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 VPS52Q8N1B4 723 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 XPO4Q9C0E2 1151 aaKnown RBP6.98□□□□□ -1.29
CLK3-212ENST00000563418 ZNF148Q9UQR1 794 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 CCND1P24385 295 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 PHBP35232 272 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 PLEKHM2Q8IWE5 1019 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 ZC4H2Q9NQZ6 224 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 RNF14Q9UBS8 474 aa6.98□□□□□ -1.29
CLK3-212ENST00000563418 PAPOLAP51003 745 aaKnown RBP6.97□□□□□ -1.29
CLK3-212ENST00000563418 RUFY3Q7L099 469 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 CACTINQ8WUQ7 758 aaKnown RBP6.97□□□□□ -1.29
CLK3-212ENST00000563418 NOX5Q96PH1 765 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 CCDC169A6NNP5 214 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 BIRC3Q13489 604 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 SAFB2Q14151 953 aaKnown RBP eCLIP6.97□□□□□ -1.29
CLK3-212ENST00000563418 CCDC13Q8IYE1 715 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 STK38LQ9Y2H1 464 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 PDS5BQ9NTI5 1447 aa6.97□□□□□ -1.29
CLK3-212ENST00000563418 BICDL2A1A5D9 508 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms