RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CEP63Q96MT8 703 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 NEUROD6Q96NK8 337 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 DNAJC25Q9H1X3 360 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 OSBPL3Q9H4L5 887 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 PFDN2Q9UHV9 154 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 PTCH2Q9Y6C5 1203 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 SCINQ9Y6U3 715 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 ALG1L2C9J202 215 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 NPHP1O15259 732 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 DIAPH1O60610 1272 aaKnown RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 CPNE3O75131 537 aaKnown RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 KATNA1O75449 491 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 EIF4A3P38919 411 aaKnown RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 STAT3P40763 770 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 RAPGEF1Q13905 1077 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 RASGRF1Q13972 1273 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 C8orf34Q49A92 452 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 NXPE4Q6UWF7 544 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 PRICKLE2Q7Z3G6 844 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 PPARGC1BQ86YN6 1023 aaKnown RBP6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 CHPFQ8IZ52 775 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 CCDC155Q8N6L0 562 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 CCDC74AQ96AQ1 378 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 ZNF700Q9H0M5 742 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 ARHGEF10LQ9HCE6 1279 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 TAGLN3Q9UI15 199 aa6.55□□□□□ -1.36
VPS35P1-201ENST00000563400 EPB41L2O43491 1005 aaKnown RBP6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 AKAP10O43572 662 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 RASGRP1O95267 797 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 GLI2P10070 1586 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 ZAP70P43403 619 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 TM4SF20Q53R12 229 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 C1orf53Q5VUE5 145 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 THAP3Q8WTV1 239 aaPredicted RBP6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 E2F7Q96AV8 911 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 ESYT1Q9BSJ8 1104 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 RSRP1Q9BUV0 290 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 SRRTQ9BXP5 876 aaKnown RBP6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 ZHX3Q9H4I2 956 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 NOB1Q9ULX3 412 aaKnown RBP6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 MAPK8IP1Q9UQF2 711 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 LZTS1Q9Y250 596 aa6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 MRPS23Q9Y3D9 190 aaKnown RBP6.54□□□□□ -1.36
VPS35P1-201ENST00000563400 NUP153P49790 1475 aaKnown RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 KDM2BQ8NHM5 1336 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 ERCC6L2Q5T890 1561 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 SLC35F4A4IF30 521 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 FAM181BA6NEQ2 426 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 IRS4O14654 1257 aaPredicted RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 GIPC1O14908 333 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 PRPF3O43395 683 aaKnown RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 FAM163BP0C2L3 166 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 VSIG8P0DPA2 414 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 GBP2P32456 591 aaPredicted RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 GUCY2FP51841 1108 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 GDF10P55107 478 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 MAPRE1Q15691 268 aaKnown RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 MTERF2Q49AM1 385 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 CCDC184Q52MB2 194 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 PCNX4Q63HM2 1172 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 FBXL19Q6PCT2 694 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 SPATC1Q76KD6 591 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 CACTIN-AS1Q8N1I8 211 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 PDILTQ8N807 584 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 CNKSR1Q969H4 720 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 NUDT16Q96DE0 195 aaKnown RBP6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 NGLY1Q96IV0 654 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 ASPSCR1Q9BZE9 553 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 UBP1Q9NZI7 540 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 ANAPC4Q9UJX5 808 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 ADCY10Q96PN6 1610 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 NEO1Q92859 1461 aa6.53□□□□□ -1.36
VPS35P1-201ENST00000563400 A0A087X0B3 334 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 PMLP29590 882 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 MAN1A1P33908 653 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 GMPRP36959 345 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 TMEM95Q3KNT9 176 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 GRAMD1BQ3KR37 738 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 WDR44Q5JSH3 913 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 IFNL3Q8IZI9 196 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 JMYQ8N9B5 988 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 C1orf131Q8NDD1 294 aaKnown RBP6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 MYRIPQ8NFW9 859 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 GPR152Q8TDT2 470 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 MYO19Q96H55 970 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 PPT2Q9UMR5 302 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 PLAAQ9Y263 795 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 PLCH2O75038 1416 aa6.52□□□□□ -1.37
VPS35P1-201ENST00000563400 MAGI3Q5TCQ9 1506 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 KIF14Q15058 1648 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 ZCCHC11Q5TAX3 1644 aaKnown RBP6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 BACH1O14867 736 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 LDHCP07864 332 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 ITGA6P23229 1130 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 CT47A1Q5JQC4 288 aaPredicted RBP6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 GNASQ5JWF2 1037 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 ACBD5Q5T8D3 534 aaPredicted RBP6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 SV2AQ7L0J3 742 aa6.51□□□□□ -1.37
VPS35P1-201ENST00000563400 RELL1Q8IUW5 271 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms