RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 SPATA32Q96LK8 384 aa22.43■■□□□ 1.18
SMPD3-203ENST00000563226 RIOK1Q9BRS2 568 aaKnown RBP22.43■■□□□ 1.18
SMPD3-203ENST00000563226 ZSCAN16Q9H4T2 348 aaPredicted RBP22.43■■□□□ 1.18
SMPD3-203ENST00000563226 IRS2Q9Y4H2 1338 aa22.43■■□□□ 1.18
SMPD3-203ENST00000563226 HIBADHP31937 336 aaKnown RBP22.42■■□□□ 1.18
SMPD3-203ENST00000563226 DYNLL1P63167 89 aaKnown RBP22.42■■□□□ 1.18
SMPD3-203ENST00000563226 AKNAD1Q5T1N1 836 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 AEBP2Q6ZN18 517 aaPredicted RBP22.42■■□□□ 1.18
SMPD3-203ENST00000563226 STK11IPQ8N1F8 1099 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 NACAP1Q9BZK3 213 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 KIF3AQ9Y496 699 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 SMIM22K7EJ46 135 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 KDM4AO75164 1064 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 RXRAP19793 462 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 GRAPQ13588 217 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 GRAPLQ8TC17 118 aaPredicted RBP22.42■■□□□ 1.18
SMPD3-203ENST00000563226 SCAND2PQ9GZW5 306 aaPredicted RBP22.42■■□□□ 1.18
SMPD3-203ENST00000563226 ZSWIM5Q9P217 1185 aa22.42■■□□□ 1.18
SMPD3-203ENST00000563226 SEMA3EO15041 775 aa22.41■■□□□ 1.18
SMPD3-203ENST00000563226 LY9Q9HBG7 655 aa22.41■■□□□ 1.18
SMPD3-203ENST00000563226 ADD1P35611 737 aaKnown RBP22.4■■□□□ 1.18
SMPD3-203ENST00000563226 CHAF1AQ13111 956 aaPredicted RBP22.4■■□□□ 1.18
SMPD3-203ENST00000563226 SLC27A3Q5K4L6 730 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 OTUD7BQ6GQQ9 843 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 APOA5Q6Q788 366 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 STAG1Q8WVM7 1258 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 CHMP4CQ96CF2 233 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 TMEM87BQ96K49 555 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 TSPY26PQ9H489 355 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 JAG2Q9Y219 1238 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 ECM29Q5VYK3 1845 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 MFSD6Q6ZSS7 791 aa22.4■■□□□ 1.18
SMPD3-203ENST00000563226 ILDR1Q86SU0 546 aaPredicted RBP22.4■■□□□ 1.18
SMPD3-203ENST00000563226 FTOQ9C0B1 505 aaKnown RBP eCLIP22.4■■□□□ 1.18
SMPD3-203ENST00000563226 DHX16O60231 1041 aaKnown RBP22.39■■□□□ 1.17
SMPD3-203ENST00000563226 LIG1P18858 919 aa22.39■■□□□ 1.17
SMPD3-203ENST00000563226 TMEM67Q5HYA8 995 aa22.39■■□□□ 1.17
SMPD3-203ENST00000563226 RRP12Q5JTH9 1297 aaKnown RBP22.39■■□□□ 1.17
SMPD3-203ENST00000563226 RNF214Q8ND24 703 aa22.39■■□□□ 1.17
SMPD3-203ENST00000563226 NSUN4Q96CB9 384 aaKnown RBP22.39■■□□□ 1.17
SMPD3-203ENST00000563226 ORC3Q9UBD5 711 aaPredicted RBP22.39■■□□□ 1.17
SMPD3-203ENST00000563226 CPLX1O14810 134 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 MICU3Q86XE3 530 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 PGBD1Q96JS3 809 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 MYL10Q9BUA6 226 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 CNNM2Q9H8M5 875 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 GJB4Q9NTQ9 266 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 MAST2Q6P0Q8 1798 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 PDS5AQ29RF7 1337 aaKnown RBP22.38■■□□□ 1.17
SMPD3-203ENST00000563226 PRDX5P30044 214 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 CDC27P30260 824 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 METAP2P50579 478 aaKnown RBP eCLIP22.38■■□□□ 1.17
SMPD3-203ENST00000563226 MECOMQ03112 1051 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 PPARAQ07869 468 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 CCDC144CPQ8IYA2 1237 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 PROM2Q8N271 834 aa22.38■■□□□ 1.17
SMPD3-203ENST00000563226 CCDC88AQ3V6T2 1871 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 IFIT3O14879 490 aaKnown RBP22.37■■□□□ 1.17
SMPD3-203ENST00000563226 SERPINB2P05120 415 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 CEBPZQ03701 1054 aaKnown RBP22.37■■□□□ 1.17
SMPD3-203ENST00000563226 SGMS1Q86VZ5 419 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 ZKSCAN3Q9BRR0 538 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 KRT23Q9C075 422 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 TOMM22Q9NS69 142 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 ANKIB1Q9P2G1 1089 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 MINDY4BA8MYZ0 360 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 NFXL1Q6ZNB6 911 aa22.37■■□□□ 1.17
SMPD3-203ENST00000563226 GPR101Q96P66 508 aaPredicted RBP22.37■■□□□ 1.17
SMPD3-203ENST00000563226 DDR1Q08345 913 aa22.36■■□□□ 1.17
SMPD3-203ENST00000563226 GIMAP6Q6P9H5 292 aa22.36■■□□□ 1.17
SMPD3-203ENST00000563226 CYP2D7A0A087X1C5 515 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 ZBTB43O43298 467 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 LIFRP42702 1097 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 C8orf76Q96K31 380 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 CCDC173Q0VFZ6 552 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 TXNRD1Q16881 649 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 CRY2Q49AN0 593 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 AIFM3Q96NN9 605 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 USP28Q96RU2 1077 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 PPP1R9BQ96SB3 815 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 FAM217BQ9NTX9 383 aaPredicted RBP22.35■■□□□ 1.17
SMPD3-203ENST00000563226 MYH2Q9UKX2 1941 aa22.35■■□□□ 1.17
SMPD3-203ENST00000563226 RPGRQ92834 1020 aaKnown RBP22.34■■□□□ 1.17
SMPD3-203ENST00000563226 CFAP45Q9UL16 551 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 DUOX1Q9NRD9 1551 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 GOLGA8AA7E2F4 631 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 ST5P78524 1137 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 FBXO18Q8NFZ0 1043 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 PHKBQ93100 1093 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 AATFQ9NY61 560 aaKnown RBP eCLIP22.34■■□□□ 1.17
SMPD3-203ENST00000563226 ANAPC4Q9UJX5 808 aa22.34■■□□□ 1.17
SMPD3-203ENST00000563226 XDHP47989 1333 aa22.33■■□□□ 1.17
SMPD3-203ENST00000563226 LETM1O95202 739 aaPredicted RBP22.33■■□□□ 1.17
SMPD3-203ENST00000563226 EVX2Q03828 476 aa22.33■■□□□ 1.17
SMPD3-203ENST00000563226 NTRK3Q16288 839 aa22.33■■□□□ 1.17
SMPD3-203ENST00000563226 FUCA2Q9BTY2 467 aa22.33■■□□□ 1.17
SMPD3-203ENST00000563226 LEMD3Q9Y2U8 911 aa22.33■■□□□ 1.17
SMPD3-203ENST00000563226 GOLGA6L4A6NEF3 574 aa22.32■■□□□ 1.16
SMPD3-203ENST00000563226 RANBP6O60518 1105 aaKnown RBP22.32■■□□□ 1.16
SMPD3-203ENST00000563226 GPSM2P81274 684 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms