RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 SEMA3FQ13275 785 aa21.34■■□□□ 1.01
RAB40C-206ENST00000561781 NECTIN1Q15223 517 aa21.34■■□□□ 1.01
RAB40C-206ENST00000561781 FAM43BQ6ZT52 329 aaPredicted RBP21.34■■□□□ 1.01
RAB40C-206ENST00000561781 CABS1Q96KC9 395 aa21.34■■□□□ 1.01
RAB40C-206ENST00000561781 CEBPZQ03701 1054 aaKnown RBP21.34■■□□□ 1.01
RAB40C-206ENST00000561781 CCAR1Q8IX12 1150 aaKnown RBP21.34■■□□□ 1.01
RAB40C-206ENST00000561781 PRPF38AQ8NAV1 312 aaKnown RBP21.34■■□□□ 1.01
RAB40C-206ENST00000561781 GBP3Q9H0R5 595 aa21.34■■□□□ 1.01
RAB40C-206ENST00000561781 GOLPH3LQ9H4A5 285 aa21.34■■□□□ 1.01
RAB40C-206ENST00000561781 THSD7AQ9UPZ6 1657 aa21.34■■□□□ 1.01
RAB40C-206ENST00000561781 EBAG9O00559 213 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 GCFC2P16383 781 aaKnown RBP21.33■■□□□ 1.01
RAB40C-206ENST00000561781 RDXP35241 583 aaKnown RBP21.33■■□□□ 1.01
RAB40C-206ENST00000561781 NBPF9Q3BBW0 867 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 TEX11Q8IYF3 940 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 ZCRB1Q8TBF4 217 aaKnown RBP21.33■■□□□ 1.01
RAB40C-206ENST00000561781 RHPN1Q8TCX5 695 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 AFAP1L1Q8TED9 768 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 ERCC4Q92889 916 aaPredicted RBP21.33■■□□□ 1.01
RAB40C-206ENST00000561781 TCEANC2Q96MN5 208 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 MCM8Q9UJA3 840 aa21.33■■□□□ 1.01
RAB40C-206ENST00000561781 TMCO5BA8MYB1 307 aa21.33■■□□□ 1
RAB40C-206ENST00000561781 SURF6O75683 361 aaKnown RBP21.33■■□□□ 1
RAB40C-206ENST00000561781 NEBLO76041 1014 aa21.33■■□□□ 1
RAB40C-206ENST00000561781 RESTQ13127 1097 aa21.33■■□□□ 1
RAB40C-206ENST00000561781 ZKSCAN8Q15776 578 aaPredicted RBP21.33■■□□□ 1
RAB40C-206ENST00000561781 ZNF530Q6P9A1 599 aaPredicted RBP21.33■■□□□ 1
RAB40C-206ENST00000561781 MARCH10Q8NA82 808 aaPredicted RBP21.33■■□□□ 1
RAB40C-206ENST00000561781 RUFY2Q8WXA3 655 aa21.33■■□□□ 1
RAB40C-206ENST00000561781 IFNKQ9P0W0 207 aa21.33■■□□□ 1
RAB40C-206ENST00000561781 FAM169AQ9Y6X4 670 aa21.33■■□□□ 1
RAB40C-206ENST00000561781 VWA3AA6NCI4 1184 aa21.32■■□□□ 1
RAB40C-206ENST00000561781 NF2P35240 595 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 GNG11P61952 73 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 STK3Q13188 491 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 CPLX2Q6PUV4 134 aaKnown RBP21.31■■□□□ 1
RAB40C-206ENST00000561781 MSANTD4Q8NCY6 345 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 SSH3Q8TE77 659 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 BRWD3Q6RI45 1802 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 SHANK3Q9BYB0 1731 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 TNS2Q63HR2 1409 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 ONECUT3O60422 494 aaPredicted RBP21.31■■□□□ 1
RAB40C-206ENST00000561781 CHMP4BP1P59074 171 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 CREB3L3Q68CJ9 461 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 CTCFLQ8NI51 663 aaPredicted RBP21.31■■□□□ 1
RAB40C-206ENST00000561781 CFAP45Q9UL16 551 aa21.31■■□□□ 1
RAB40C-206ENST00000561781 INPP5BP32019 993 aa21.3■■□□□ 1
RAB40C-206ENST00000561781 CASP8Q14790 479 aa21.3■■□□□ 1
RAB40C-206ENST00000561781 PARP4Q9UKK3 1724 aaKnown RBP21.3■■□□□ 1
RAB40C-206ENST00000561781 KINO60870 393 aaKnown RBP21.3■■□□□ 1
RAB40C-206ENST00000561781 BPIFA3Q9BQP9 254 aa21.3■■□□□ 1
RAB40C-206ENST00000561781 RBM8AQ9Y5S9 174 aaKnown RBP21.3■■□□□ 1
RAB40C-206ENST00000561781 CHUKO15111 745 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 TUBBP07437 444 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 FLIIQ13045 1269 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 CRYMQ14894 314 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 MPRIPQ6WCQ1 1025 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 PTF1AQ7RTS3 328 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 SRGAP1Q7Z6B7 1085 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 N4BP2L2Q92802 583 aaPredicted RBP21.29■■□□□ 1
RAB40C-206ENST00000561781 ANKZF1Q9H8Y5 726 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 ACSBG1Q96GR2 724 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 WDR24Q96S15 920 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 ABCB6Q9NP58 842 aa21.29■■□□□ 1
RAB40C-206ENST00000561781 JAK2O60674 1132 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 PHACTR2O75167 634 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 CCDC73Q6ZRK6 1079 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 ILDR2Q71H61 639 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 PLCD4Q9BRC7 762 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 PPP2R2CQ9Y2T4 447 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 NAIF1Q69YI7 327 aaPredicted RBP21.28■■□□□ 1
RAB40C-206ENST00000561781 TICAM2Q86XR7 235 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 FAM177A1Q8N128 213 aaPredicted RBP21.28■■□□□ 1
RAB40C-206ENST00000561781 BRF1Q92994 677 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 CALR3Q96L12 384 aaKnown RBP21.28■■□□□ 1
RAB40C-206ENST00000561781 STK31Q9BXU1 1019 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 USP44Q9H0E7 712 aa21.28■■□□□ 1
RAB40C-206ENST00000561781 ARHGAP6O43182 974 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 UBTFL1P0CB47 393 aaPredicted RBP21.27■■□□□ 1
RAB40C-206ENST00000561781 PSMA5P28066 241 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 TOB2Q14106 344 aaPredicted RBP21.27■■□□□ 1
RAB40C-206ENST00000561781 ANKRD1Q15327 319 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 PREPLQ4J6C6 727 aaPredicted RBP21.27■■□□□ 1
RAB40C-206ENST00000561781 PPP1R42Q7Z4L9 355 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 CEP112Q8N8E3 955 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 KIFC2Q96AC6 838 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 FTOQ9C0B1 505 aaKnown RBP eCLIP21.27■■□□□ 1
RAB40C-206ENST00000561781 PHKG2P15735 406 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 DHX58Q96C10 678 aa21.27■■□□□ 1
RAB40C-206ENST00000561781 TRIM6Q9C030 488 aaPredicted RBP21.27■■□□□ 1
RAB40C-206ENST00000561781 H3BQV1 296 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 RNF40O75150 1001 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 IFFO2Q5TF58 517 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 BLOC1S2Q6QNY1 142 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 KRT27Q7Z3Y8 459 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 ENGASEQ8NFI3 743 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 LGR6Q9HBX8 967 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 TSPYL4Q9UJ04 414 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 PKD1L3Q7Z443 1732 aa21.26■□□□□ 0.99
RAB40C-206ENST00000561781 SHOX2O60902 331 aaPredicted RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms