RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 CNNM3Q8NE01 707 aa18.91■□□□□ 0.62
TPM1-228ENST00000560975 CHMP4CQ96CF2 233 aa18.91■□□□□ 0.62
TPM1-228ENST00000560975 IVLP07476 585 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 BMP6P22004 513 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 RFX5P48382 616 aaPredicted RBP18.9■□□□□ 0.62
TPM1-228ENST00000560975 ZNF827Q17R98 1081 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 SPECC1LQ69YQ0 1117 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 IQUBQ8NA54 791 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 XAGE3Q8WTP9 111 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 CPLX3Q8WVH0 158 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 C19orf44Q9H6X5 657 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 TOMM22Q9NS69 142 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 PLEKHG2Q9H7P9 1386 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 KDM3BQ7LBC6 1761 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 TIMM10P62072 90 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 PACS2Q86VP3 889 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 HELLSQ9NRZ9 838 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 NFE2L3Q9Y4A8 694 aa18.9■□□□□ 0.62
TPM1-228ENST00000560975 PDIA6Q15084 440 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 PLEKHO1Q53GL0 409 aaPredicted RBP18.89■□□□□ 0.61
TPM1-228ENST00000560975 NOM1Q5C9Z4 860 aaKnown RBP18.89■□□□□ 0.61
TPM1-228ENST00000560975 COPS6Q7L5N1 327 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 STK11IPQ8N1F8 1099 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 MAST3O60307 1309 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 RGPD8O14715 1765 aaPredicted RBP18.89■□□□□ 0.61
TPM1-228ENST00000560975 PRC1O43663 620 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 SLC39A6Q13433 755 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 TTC31Q49AM3 519 aaPredicted RBP18.89■□□□□ 0.61
TPM1-228ENST00000560975 HPS5Q9UPZ3 1129 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 TMEM2Q9UHN6 1383 aa18.89■□□□□ 0.61
TPM1-228ENST00000560975 A0A1B0GUL7 405 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 M0R2C6 588 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 FMR1Q06787 632 aaKnown RBP eCLIP18.88■□□□□ 0.61
TPM1-228ENST00000560975 ZMYM1Q5SVZ6 1142 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 ICE2Q659A1 982 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 EIF3CLB5ME19 914 aaKnown RBP18.88■□□□□ 0.61
TPM1-228ENST00000560975 ATP5J2-PTCD1G3V325 749 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 PTCD1O75127 700 aaKnown RBP18.88■□□□□ 0.61
TPM1-228ENST00000560975 CCDC175P0C221 793 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 KIF4BQ2VIQ3 1234 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 EIF3CQ99613 913 aaKnown RBP18.88■□□□□ 0.61
TPM1-228ENST00000560975 HPSEQ9Y251 543 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 RFX7Q2KHR2 1363 aa18.88■□□□□ 0.61
TPM1-228ENST00000560975 EIF3JO75822 258 aaKnown RBP18.87■□□□□ 0.61
TPM1-228ENST00000560975 RXRAP19793 462 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 ZNF569Q5MCW4 686 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 CCDC102BQ68D86 513 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 AKAP2Q9Y2D5 859 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 MED1Q15648 1581 aaPredicted RBP18.87■□□□□ 0.61
TPM1-228ENST00000560975 HSP90AB3PQ58FF7 597 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 ERLIN1O75477 346 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 VSNL1P62760 191 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 VPS37DQ86XT2 251 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 IP6K1Q92551 441 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 SAMSN1Q9NSI8 373 aaKnown RBP18.87■□□□□ 0.61
TPM1-228ENST00000560975 CDC23Q9UJX2 597 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 L1RE1Q9UN81 338 aa18.87■□□□□ 0.61
TPM1-228ENST00000560975 DIP2BQ9P265 1576 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 HSP90B2PQ58FF3 399 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 ANKARQ7Z5J8 1434 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 MAGEA9P43362 315 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 RAD9BQ6WBX8 426 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 DRC1Q96MC2 740 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 KCNH3Q9ULD8 1083 aa18.86■□□□□ 0.61
TPM1-228ENST00000560975 PALLDQ8WX93 1383 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 KIF5CO60282 957 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 CASP8Q14790 479 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 CEP112Q8N8E3 955 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 HNRNPLLQ8WVV9 542 aaKnown RBP18.85■□□□□ 0.61
TPM1-228ENST00000560975 ALG1Q9BT22 464 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.85■□□□□ 0.61
TPM1-228ENST00000560975 RAI14Q9P0K7 980 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 JRKLQ9Y4A0 524 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 MRC1P22897 1456 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 CTR9Q6PD62 1173 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 LRRC31Q6UY01 552 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 JMYQ8N9B5 988 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 METTL22Q9BUU2 404 aaPredicted RBP18.85■□□□□ 0.61
TPM1-228ENST00000560975 SLIT1O75093 1534 aa18.85■□□□□ 0.61
TPM1-228ENST00000560975 WASHC4Q2M389 1173 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 RESP18Q5W5W9 173 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 PAXIP1Q6ZW49 1069 aaPredicted RBP18.84■□□□□ 0.61
TPM1-228ENST00000560975 GRAMD1CQ8IYS0 662 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 RGS22Q8NE09 1264 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 OSBP2Q969R2 916 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 TEX13AQ9BXU3 409 aaPredicted RBP18.84■□□□□ 0.61
TPM1-228ENST00000560975 MAN1B1Q9UKM7 699 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 RNF113AO15541 343 aaKnown RBP18.84■□□□□ 0.61
TPM1-228ENST00000560975 TEX33O43247 280 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 PTPAQ15257 358 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 PHKBQ93100 1093 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 RNF216Q9NWF9 866 aaPredicted RBP18.84■□□□□ 0.61
TPM1-228ENST00000560975 ADGRG1Q9Y653 693 aa18.84■□□□□ 0.61
TPM1-228ENST00000560975 AKR1B15C9JRZ8 316 aaPredicted RBP18.83■□□□□ 0.61
TPM1-228ENST00000560975 PRR29P0C7W0 189 aa18.83■□□□□ 0.61
TPM1-228ENST00000560975 LMBR1LQ6UX01 489 aa18.83■□□□□ 0.61
TPM1-228ENST00000560975 RAB21Q9UL25 225 aa18.83■□□□□ 0.61
TPM1-228ENST00000560975 PXDNQ92626 1479 aa18.83■□□□□ 0.61
TPM1-228ENST00000560975 A0A087WZG4 1122 aa18.83■□□□□ 0.6
TPM1-228ENST00000560975 IFIT1P09914 478 aaKnown RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms