RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 FAM184BQ9ULE4 1060 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 DEXIO95424 95 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 TERF1P54274 439 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 ERCC6LQ2NKX8 1250 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 IFT20Q8IY31 132 aa14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 MAK16Q9BXY0 300 aaKnown RBP14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 ZC3H12CQ9C0D7 883 aaKnown RBP14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 NIP7Q9Y221 180 aaKnown RBP eCLIP14.8□□□□□ -0.04
CSPG4P11-201ENST00000560634 ATP11AP98196 1134 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 TPTE2Q6XPS3 522 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 TMTC1Q8IUR5 882 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 SPOPO43791 374 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 STX10O60499 249 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 TNFAIP3P21580 790 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 GABPB1Q06547 395 aaPredicted RBP14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 FYB2Q5VWT5 728 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 ODF2LQ9ULJ1 636 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 GAS8O95995 478 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 NEDD9Q14511 834 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 WDR44Q5JSH3 913 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 ANO1Q5XXA6 986 aa14.79□□□□□ -0.04
CSPG4P11-201ENST00000560634 VWA3AA6NCI4 1184 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 PICALMQ13492 652 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 CHST3Q7LGC8 479 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 LMNTD2Q8IXW0 634 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 KCNH3Q9ULD8 1083 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 ZWINTO95229 277 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 U2AF2P26368 475 aaKnown RBP eCLIP14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 MAGEB6Q8N7X4 407 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 PARD3Q8TEW0 1356 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 ARHGAP6O43182 974 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 GTF3C6Q969F1 213 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 CLSTN2Q9H4D0 955 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 CETN3O15182 167 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 CUTAO60888 179 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 RPS6KB1P23443 525 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 SLC39A6Q13433 755 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 EIF4A2Q14240 407 aaKnown RBP14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 DCAF17Q5H9S7 520 aaPredicted RBP14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 ZNF365Q70YC5 407 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 GABPB2Q8TAK5 448 aaPredicted RBP14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 STK24Q9Y6E0 443 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 NUP160Q12769 1436 aa14.78□□□□□ -0.04
CSPG4P11-201ENST00000560634 PPP2R5BQ15173 497 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 WDR66Q8TBY9 1149 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 NOX5Q96PH1 765 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 VCX3BQ9H321 246 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 FAM204AQ9H8W3 233 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 ZRANB1Q9UGI0 708 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 PARP1P09874 1014 aaKnown RBP14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 ARHGAP25P42331 645 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 UBL4BQ8N7F7 174 aa14.77□□□□□ -0.04
CSPG4P11-201ENST00000560634 INPP5BP32019 993 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 PDE4DQ08499 809 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 CHRNA2Q15822 529 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 UTP11Q9Y3A2 253 aaKnown RBP14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 KIF14Q15058 1648 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 LDHBP07195 334 aaKnown RBP14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 ATP6V1AP38606 617 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 FANCCQ00597 558 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 TFCP2Q12800 502 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 NAA25Q14CX7 972 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 SLC9C1Q4G0N8 1177 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 HAUS3Q68CZ6 603 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 FNBP1Q96RU3 617 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 TSKSQ9UJT2 592 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 AOX1Q06278 1338 aa14.77□□□□□ -0.05
CSPG4P11-201ENST00000560634 GOLGA6CA6NDK9 693 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 GOLGA6DP0CG33 693 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 CCT6AP40227 531 aaKnown RBP14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 ARHGAP24Q8N264 748 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 SH2D4AQ9H788 454 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 GOLGA6AQ9NYA3 693 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 IRS4O14654 1257 aaPredicted RBP14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 RPUSD2Q8IZ73 545 aaKnown RBP14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 FAM212AQ96EL1 285 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 FLT4P35916 1363 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 PLB1Q6P1J6 1458 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 ZNF445P59923 1031 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 LIN9Q5TKA1 542 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 PAXIP1Q6ZW49 1069 aaPredicted RBP14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 POLKQ9UBT6 870 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 F8W031 263 aaPredicted RBP14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 ZNF174Q15697 407 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 TAOK1Q7L7X3 1001 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 DZIP3Q86Y13 1208 aaKnown RBP14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 CSGALNACT2Q8N6G5 542 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 IQCDQ96DY2 449 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 RBSNQ9H1K0 784 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 VPS16Q9H269 839 aa14.76□□□□□ -0.05
CSPG4P11-201ENST00000560634 SMTNP53814 917 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 PPFIA1Q13136 1202 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 MTHFSDQ2M296 383 aaKnown RBP14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 LETM2Q2VYF4 491 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 KRBA2Q6ZNG9 492 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 VPS52Q8N1B4 723 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 MIGA1Q8NAN2 632 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 RLBP1P12271 317 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 DPH6Q7L8W6 267 aa14.75□□□□□ -0.05
CSPG4P11-201ENST00000560634 SECISBP2LQ93073 1101 aaKnown RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms