RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 RC3H2Q9HBD1 1191 aaKnown RBP6.36□□□□□ -1.39
SPG11-222ENST00000560435 AOC2O75106 756 aa6.35□□□□□ -1.39
SPG11-222ENST00000560435 POLR3DP05423 398 aaPredicted RBP6.35□□□□□ -1.39
SPG11-222ENST00000560435 GALNT12Q8IXK2 581 aa6.35□□□□□ -1.39
SPG11-222ENST00000560435 TMEM40Q8WWA1 233 aa6.35□□□□□ -1.39
SPG11-222ENST00000560435 WDR18Q9BV38 432 aa6.35□□□□□ -1.39
SPG11-222ENST00000560435 RNASE1P07998 156 aaKnown RBP6.34□□□□□ -1.39
SPG11-222ENST00000560435 CD8BP10966 210 aa6.34□□□□□ -1.39
SPG11-222ENST00000560435 KSR1Q8IVT5 923 aa6.34□□□□□ -1.39
SPG11-222ENST00000560435 PLD6Q8N2A8 252 aaKnown RBP6.34□□□□□ -1.39
SPG11-222ENST00000560435 MBNL3Q9NUK0 354 aaKnown RBP6.34□□□□□ -1.39
SPG11-222ENST00000560435 VAV3Q9UKW4 847 aa6.34□□□□□ -1.39
SPG11-222ENST00000560435 FAM87AP0C7U9 286 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 PRKCQQ04759 706 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 PDE3AQ14432 1141 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 ZNF576Q9H609 170 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 LGR6Q9HBX8 967 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 ADAMTS6Q9UKP5 1117 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 PPP1R9AQ9ULJ8 1098 aa6.33□□□□□ -1.4
SPG11-222ENST00000560435 TMPRSS2O15393 492 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 SSFA2P28290 1259 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 AP3B2Q13367 1082 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 SF3B2Q13435 895 aaKnown RBP6.32□□□□□ -1.4
SPG11-222ENST00000560435 FAM181AQ8N9Y4 354 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 LRRN4CLQ8ND94 238 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 MKNK2Q9HBH9 465 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 CCDC87Q9NVE4 849 aa6.32□□□□□ -1.4
SPG11-222ENST00000560435 ITPKAP23677 461 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 CDK5R2Q13319 367 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 KRTAP19-4Q3LI73 84 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 KIAA0319Q5VV43 1072 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 PI4K2BQ8TCG2 481 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 SLC38A3Q99624 504 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 CRIM1Q9NZV1 1036 aa6.31□□□□□ -1.4
SPG11-222ENST00000560435 FKBP4Q02790 459 aaKnown RBP eCLIP6.3□□□□□ -1.4
SPG11-222ENST00000560435 IFI16Q16666 785 aaKnown RBP6.3□□□□□ -1.4
SPG11-222ENST00000560435 BHLHE22Q8NFJ8 381 aaPredicted RBP6.3□□□□□ -1.4
SPG11-222ENST00000560435 CCDC97Q96F63 343 aaPredicted RBP6.3□□□□□ -1.4
SPG11-222ENST00000560435 ATXN3LQ9H3M9 355 aa6.3□□□□□ -1.4
SPG11-222ENST00000560435 PIDD1Q9HB75 910 aa6.3□□□□□ -1.4
SPG11-222ENST00000560435 MTMR7Q9Y216 660 aa6.3□□□□□ -1.4
SPG11-222ENST00000560435 CD96P40200 585 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 PTPN12Q05209 780 aaKnown RBP6.29□□□□□ -1.4
SPG11-222ENST00000560435 MESP2Q0VG99 397 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 FAM84AQ96KN4 292 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 HRASLS5Q96KN8 279 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 FANCD2OSQ96PS1 177 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 KRTAP4-11Q9BYQ6 195 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 U3KQE9 123 aa6.29□□□□□ -1.4
SPG11-222ENST00000560435 TMEM88BA6NKF7 163 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 CEACAM5P06731 702 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 LIG1P18858 919 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 OXCT1P55809 520 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 ID3Q02535 119 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 AOC3Q16853 763 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 ANGEL2Q5VTE6 544 aaKnown RBP6.28□□□□□ -1.4
SPG11-222ENST00000560435 SMYD4Q8IYR2 804 aaPredicted RBP6.28□□□□□ -1.4
SPG11-222ENST00000560435 FLAD1Q8NFF5 587 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 SERPINA10Q9UK55 444 aa6.28□□□□□ -1.4
SPG11-222ENST00000560435 TMEM265A0A087WTH1 108 aa6.27□□□□□ -1.41
SPG11-222ENST00000560435 SLFN14P0C7P3 912 aa6.27□□□□□ -1.41
SPG11-222ENST00000560435 RPS26P11Q5JNZ5 115 aaPredicted RBP6.27□□□□□ -1.41
SPG11-222ENST00000560435 SLC23A3Q6PIS1 610 aa6.27□□□□□ -1.41
SPG11-222ENST00000560435 WDR89Q96FK6 387 aaPredicted RBP6.27□□□□□ -1.41
SPG11-222ENST00000560435 EHD4Q9H223 541 aa6.27□□□□□ -1.41
SPG11-222ENST00000560435 CCDC86Q9H6F5 360 aaKnown RBP6.27□□□□□ -1.41
SPG11-222ENST00000560435 KRTAP9-7A8MTY7 169 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 NEFLP07196 543 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 HNRNPUQ00839 825 aaKnown RBP eCLIP6.26□□□□□ -1.41
SPG11-222ENST00000560435 KIF4BQ2VIQ3 1234 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 USPL1Q5W0Q7 1092 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 ARHGAP27Q6ZUM4 889 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 CILP2Q8IUL8 1156 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 DUSP23Q9BVJ7 150 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 DISC1Q9NRI5 854 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 KRT82Q9NSB4 513 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 FAM53CQ9NYF3 392 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 PLAGL2Q9UPG8 496 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 PCDHGC5Q9Y5F6 944 aa6.26□□□□□ -1.41
SPG11-222ENST00000560435 LRRC10BA6NIK2 292 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 ZNF862O60290 1169 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 LEFTY1O75610 366 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 TTLL4Q14679 1199 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 PRPF40BQ6NWY9 871 aaKnown RBP6.25□□□□□ -1.41
SPG11-222ENST00000560435 ZSWIM9Q86XI8 627 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 TNKS2Q9H2K2 1166 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 ABCB6Q9NP58 842 aa6.25□□□□□ -1.41
SPG11-222ENST00000560435 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.25□□□□□ -1.41
SPG11-222ENST00000560435 ABL1P00519 1130 aa6.24□□□□□ -1.41
SPG11-222ENST00000560435 ZNF211Q13398 564 aaPredicted RBP6.24□□□□□ -1.41
SPG11-222ENST00000560435 NPHS2Q9NP85 383 aa6.24□□□□□ -1.41
SPG11-222ENST00000560435 PCOLCE2Q9UKZ9 415 aa6.24□□□□□ -1.41
SPG11-222ENST00000560435 SNX11Q9Y5W9 270 aa6.24□□□□□ -1.41
SPG11-222ENST00000560435 KCNMB1Q16558 191 aa6.23□□□□□ -1.41
SPG11-222ENST00000560435 PHLDB3Q6NSJ2 640 aa6.23□□□□□ -1.41
SPG11-222ENST00000560435 TOX2Q96NM4 488 aa6.23□□□□□ -1.41
SPG11-222ENST00000560435 ZC3H12CQ9C0D7 883 aaKnown RBP6.23□□□□□ -1.41
SPG11-222ENST00000560435 ANO2Q9NQ90 1003 aa6.23□□□□□ -1.41
SPG11-222ENST00000560435 ZNF503-AS2A6NEH8 195 aa6.22□□□□□ -1.41
SPG11-222ENST00000560435 RNGTTO60942 597 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms