RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	TOPBP1	Q92547	1522 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	USP19	O94966	1318 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	MAPK8IP3	Q9UPT6	1336 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	OIP5	O43482	229 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	COL8A1	P27658	744 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	GBP2	P32456	591 aa	Predicted RBP	6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	PRPF40B	Q6NWY9	871 aa	Known RBP	6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	CRBN	Q96SW2	442 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	CRISPLD1	Q9H336	500 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	ANTXR1	Q9H6X2	564 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	BRD7	Q9NPI1	651 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	RRP7BP	Q9NSQ0	103 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	PPM1H	Q9ULR3	514 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	ANKRD30A	Q9BXX3	1397 aa		6.56	□□□□□ -1.36
TPM1-222	ENST00000560131	ABCC2	Q92887	1545 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	SHANK2	Q9UPX8	1470 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	TRPM1	Q7Z4N2	1603 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	ADCY10	Q96PN6	1610 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	TMEM238L	A0A1B0GVL6	79 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	CLSTN1	O94985	981 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	NASP	P49321	788 aa	Predicted RBP	6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	MRE11	P49959	708 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	FCGRT	P55899	365 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	COL9A2	Q14055	689 aa	Predicted RBP	6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	SAMD5	Q5TGI4	173 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	PEAR1	Q5VY43	1037 aa	Predicted RBP	6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	SV2B	Q7L1I2	683 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	NLRP8	Q86W28	1048 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	NLGN1	Q8N2Q7	840 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	ZNF296	Q8WUU4	475 aa	Predicted RBP	6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	ZNF837	Q96EG3	531 aa	Predicted RBP	6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	EAF1	Q96JC9	268 aa	Predicted RBP	6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	MAP7D2	Q96T17	732 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	NT5C1A	Q9BXI3	368 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	ZFYVE1	Q9HBF4	777 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	SALL4	Q9UJQ4	1053 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	STRIP2	Q9ULQ0	834 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	EFR3B	Q9Y2G0	817 aa		6.55	□□□□□ -1.36
TPM1-222	ENST00000560131	COL17A1	Q9UMD9	1497 aa	Predicted RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	ZNF521	Q96K83	1311 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	EIF4G3	O43432	1585 aa	Known RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	LAMC3	Q9Y6N6	1575 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	PTPRG	P23470	1445 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	GOLGA6L3	A6NEY3	463 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	GPR25	O00155	361 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	SASH3	O75995	380 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	CYP2E1	P05181	493 aa	Predicted RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	RHOQ	P17081	205 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	PTMS	P20962	102 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	KCNQ4	P56696	695 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	SERINC3	Q13530	473 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	TRIM22	Q8IYM9	498 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	SPACA7	Q96KW9	195 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	TRIM56	Q9BRZ2	755 aa	Known RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	ZCCHC2	Q9C0B9	1178 aa	Known RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	ZNF408	Q9H9D4	720 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	KCNQ5	Q9NR82	932 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	LATS2	Q9NRM7	1088 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	GINM1	Q9NU53	330 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	SIRPG	Q9P1W8	387 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	NSFL1C	Q9UNZ2	370 aa	Known RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	KCNH4	Q9UQ05	1017 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	AKAP2	Q9Y2D5	859 aa		6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	EIF2AK4	Q9P2K8	1649 aa	Known RBP	6.54	□□□□□ -1.36
TPM1-222	ENST00000560131	FANCD2	Q9BXW9	1451 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	C1QTNF9B	B2RNN3	333 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	XRCC6	P12956	609 aa	Known RBP eCLIP	6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	HSD3B2	P26439	372 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	ETFB	P38117	255 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	SOX9	P48436	509 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	CCIN	Q13939	588 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	TCEAL1	Q15170	157 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	DTHD1	Q6ZMT9	781 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	JAZF1	Q86VZ6	243 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	KRTAP19-1	Q8IUB9	90 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	TRMT2A	Q8IZ69	625 aa	Known RBP	6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	PGBD3	Q8N328	593 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	OR13H1	Q8NG92	308 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	OXCT2	Q9BYC2	517 aa	Predicted RBP	6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	LIN7B	Q9HAP6	207 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	GOLGA2P5	Q9HBQ8	144 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	POGK	Q9P215	609 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	KANSL3	Q9P2N6	904 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	PRDM15	P57071	1507 aa	Predicted RBP	6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	ABCC10	Q5T3U5	1492 aa		6.53	□□□□□ -1.36
TPM1-222	ENST00000560131	IQGAP2	Q13576	1575 aa		6.52	□□□□□ -1.36
TPM1-222	ENST00000560131	CGNL1	Q0VF96	1302 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	NUP160	Q12769	1436 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	SCO2	A0A1W2PP80	73 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131		F6X3S4	739 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	GREM1	O60565	184 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	MMP20	O60882	483 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	F11	P03951	625 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	TARS	P26639	723 aa	Known RBP	6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	FBXL19	Q6PCT2	694 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	ANKS3	Q6ZW76	656 aa		6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	MTERF4	Q7Z6M4	381 aa	Known RBP	6.52	□□□□□ -1.37
TPM1-222	ENST00000560131	NAP1L5	Q96NT1	182 aa	Predicted RBP	6.52	□□□□□ -1.37

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