RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 TTF2Q9UNY4 1162 aaKnown RBP20.67■□□□□ 0.9
CHRNA3-206ENST00000559658 TACC3Q9Y6A5 838 aa20.67■□□□□ 0.9
CHRNA3-206ENST00000559658 NAV1Q8NEY1 1877 aa20.66■□□□□ 0.9
CHRNA3-206ENST00000559658 LAMB1P07942 1786 aa20.66■□□□□ 0.9
CHRNA3-206ENST00000559658 STRIP1Q5VSL9 837 aa20.66■□□□□ 0.9
CHRNA3-206ENST00000559658 RNF20Q5VTR2 975 aa20.66■□□□□ 0.9
CHRNA3-206ENST00000559658 KIAA0825Q8IV33 1275 aa20.66■□□□□ 0.9
CHRNA3-206ENST00000559658 DAGLAQ9Y4D2 1042 aa20.66■□□□□ 0.9
CHRNA3-206ENST00000559658 DDX60LQ5H9U9 1706 aaKnown RBP20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 USP17L3A6NCW0 530 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 USP17L4A6NCW7 530 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 BTDP43251 543 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 TSGA10IPQ3SY00 556 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 USP17L1Q7RTZ2 530 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 SNX21Q969T3 373 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 LARP6Q9BRS8 491 aaKnown RBP20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 SYT17Q9BSW7 474 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 GAKO14976 1311 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 FOCADQ5VW36 1801 aa20.65■□□□□ 0.9
CHRNA3-206ENST00000559658 CYP2D7A0A087X1C5 515 aa20.64■□□□□ 0.9
CHRNA3-206ENST00000559658 TTC14Q96N46 770 aa20.64■□□□□ 0.9
CHRNA3-206ENST00000559658 INCENPQ9NQS7 918 aa20.64■□□□□ 0.9
CHRNA3-206ENST00000559658 E7EWF7 191 aa20.64■□□□□ 0.89
CHRNA3-206ENST00000559658 SPRYD3Q8NCJ5 442 aa20.64■□□□□ 0.89
CHRNA3-206ENST00000559658 NAPBQ9H115 298 aa20.64■□□□□ 0.89
CHRNA3-206ENST00000559658 ZSWIM6Q9HCJ5 1215 aa20.64■□□□□ 0.89
CHRNA3-206ENST00000559658 PSMD14O00487 310 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 TDO2P48775 406 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 GSTO1P78417 241 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 CTDSPL2Q05D32 466 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 SLC4A8Q2Y0W8 1093 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 HSCBQ8IWL3 235 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 STK11IPQ8N1F8 1099 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 ECM29Q5VYK3 1845 aa20.63■□□□□ 0.89
CHRNA3-206ENST00000559658 ZMYM6O95789 1325 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 GNAT2P19087 354 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 ALX1Q15699 326 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 IMMTQ16891 758 aaKnown RBP20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 CTNNA3Q9UI47 895 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 GPR75-ASB3A0A0A6YYF3 556 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 RHBDL3P58872 404 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 RUFY3Q7L099 469 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 NIM1KQ8IY84 436 aa20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 DCP1AQ9NPI6 582 aaPredicted RBP20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 ZBTB12Q9Y330 459 aaPredicted RBP20.62■□□□□ 0.89
CHRNA3-206ENST00000559658 NEDD4P46934 1319 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 CYP2D6P10635 497 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 AK2P54819 239 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 BECN1Q14457 450 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 LRRC2Q9BYS8 371 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 TM6SF1Q9BZW5 370 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 SUGT1Q9Y2Z0 365 aa20.61■□□□□ 0.89
CHRNA3-206ENST00000559658 ZNF213O14771 459 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 ST18O60284 1047 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 PPP4CP60510 307 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 CHST3Q7LGC8 479 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 FAM163AQ96GL9 167 aaPredicted RBP20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 NEK1Q96PY6 1258 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 CRNKL1Q9BZJ0 848 aaKnown RBP20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 ZNRF3Q9ULT6 936 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 LTBP3Q9NS15 1303 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 K7ELQ4 463 aaPredicted RBP20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 YBX3P16989 372 aaKnown RBP eCLIP20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 RPS6KB1P23443 525 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 BLOC1S2Q6QNY1 142 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 CYP46A1Q9Y6A2 500 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 SBF1O95248 1867 aa20.6■□□□□ 0.89
CHRNA3-206ENST00000559658 LDHCP07864 332 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 CRKP46108 304 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 FKBP1AP62942 108 aaKnown RBP20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 CXCL9Q07325 125 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 CTR9Q6PD62 1173 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 TGFBRAP1Q8WUH2 860 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 NACAP1Q9BZK3 213 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 FOXD4L1Q9NU39 408 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 PDRG1Q9NUG6 133 aa20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 MKRN1Q9UHC7 482 aaKnown RBP20.59■□□□□ 0.89
CHRNA3-206ENST00000559658 MINDY4BA8MYZ0 360 aa20.58■□□□□ 0.89
CHRNA3-206ENST00000559658 LARGE1O95461 756 aa20.58■□□□□ 0.89
CHRNA3-206ENST00000559658 KRT32Q14532 448 aa20.58■□□□□ 0.89
CHRNA3-206ENST00000559658 APOBEC3HQ6NTF7 200 aaKnown RBP20.58■□□□□ 0.89
CHRNA3-206ENST00000559658 TMED8Q6PL24 325 aaPredicted RBP20.58■□□□□ 0.89
CHRNA3-206ENST00000559658 MAPKAPK5Q8IW41 473 aa20.58■□□□□ 0.89
CHRNA3-206ENST00000559658 SHTN1A0MZ66 631 aa20.58■□□□□ 0.88
CHRNA3-206ENST00000559658 IGSF3O75054 1194 aa20.58■□□□□ 0.88
CHRNA3-206ENST00000559658 USP17L8P0C7I0 530 aa20.58■□□□□ 0.88
CHRNA3-206ENST00000559658 PPARAQ07869 468 aa20.58■□□□□ 0.88
CHRNA3-206ENST00000559658 RSBN1LQ6PCB5 846 aaPredicted RBP20.58■□□□□ 0.88
CHRNA3-206ENST00000559658 VPS33BQ9H267 617 aa20.58■□□□□ 0.88
CHRNA3-206ENST00000559658 MYH1P12882 1939 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 USP17L12C9JPN9 530 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 USP17L21D6R901 530 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 BAG3O95817 575 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 VIL1P09327 827 aaKnown RBP20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 PSMA5P28066 241 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 TOB2Q14106 344 aaPredicted RBP20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 TEX11Q8IYF3 940 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 TEKT1Q969V4 418 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 GMLQ99445 158 aa20.57■□□□□ 0.88
CHRNA3-206ENST00000559658 GPHNQ9NQX3 736 aaPredicted RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms