RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PIF1Q9H611 641 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 FAM13BQ9NYF5 915 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 SCHIP1Q9P0W5 487 aaPredicted RBP6.45□□□□□ -1.38
LDLR-209ENST00000558528 CHL1O00533 1208 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 XRCC5P13010 732 aaKnown RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 IL2RBP14784 551 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 ST13P50502 369 aaKnown RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 DHX9Q08211 1270 aaKnown RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 TEFQ10587 303 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 C4orf48Q5BLP8 95 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 VARS2Q5ST30 1063 aaKnown RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 ZNF530Q6P9A1 599 aaPredicted RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 CYP2U1Q7Z449 544 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 NLGN1Q8N2Q7 840 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 POLIQ9UNA4 740 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 NOP58Q9Y2X3 529 aaKnown RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 LAS1LQ9Y4W2 734 aaKnown RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 TRPM3Q9HCF6 1732 aaPredicted RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 RNF123Q5XPI4 1314 aa6.44□□□□□ -1.38
LDLR-209ENST00000558528 RGPD8O14715 1765 aaPredicted RBP6.44□□□□□ -1.38
LDLR-209ENST00000558528 NCAPD2Q15021 1401 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 COL24A1Q17RW2 1714 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 PEAK1Q9H792 1746 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 A0A1W2PRU2 124 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 RAB11FIP3O75154 756 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 GNRH1P01148 92 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 CTSHP09668 335 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 ATF4P18848 351 aaPredicted RBP6.43□□□□□ -1.38
LDLR-209ENST00000558528 RRP1P56182 461 aaKnown RBP6.43□□□□□ -1.38
LDLR-209ENST00000558528 PDE3AQ14432 1141 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 SLC15A2Q16348 729 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 ZNF394Q53GI3 561 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 SLC9A9Q8IVB4 645 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 ZNF526Q8TF50 670 aaPredicted RBP6.43□□□□□ -1.38
LDLR-209ENST00000558528 DCAF5Q96JK2 942 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 SRCIN1Q9C0H9 1055 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 SRA1Q9HD15 236 aaKnown RBP6.43□□□□□ -1.38
LDLR-209ENST00000558528 STRN4Q9NRL3 753 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 TSPYL4Q9UJ04 414 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 GGT7Q9UJ14 662 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 FANCIQ9NVI1 1328 aa6.43□□□□□ -1.38
LDLR-209ENST00000558528 PHRF1Q9P1Y6 1649 aaKnown RBP6.43□□□□□ -1.38
LDLR-209ENST00000558528 ALS2Q96Q42 1657 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 SBF2Q86WG5 1849 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 A6NJY4 79 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 EXOC5O00471 708 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 ENPP3O14638 875 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 RNMTO43148 476 aaKnown RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 TOMM70O94826 608 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 PDGFAP04085 211 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 HOXB7P09629 217 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 SCTRP47872 440 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 RARSP54136 660 aaKnown RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 HIRAP54198 1017 aaPredicted RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 RACK1P63244 317 aaKnown RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 EXOSC9Q06265 439 aaKnown RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 BMS1Q14692 1282 aaKnown RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 MTFR1Q15390 333 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 LINC01559Q495D7 138 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 INTS6LQ5JSJ4 861 aaKnown RBP6.42□□□□□ -1.38
LDLR-209ENST00000558528 NYAP1Q6ZVC0 841 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 ZNF687Q8N1G0 1237 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 USHBP1Q8N6Y0 703 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 ARHGAP45Q92619 1136 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 GPRASP2Q96D09 838 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 CFHR5Q9BXR6 569 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 OSBPL3Q9H4L5 887 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 MBIPQ9NS73 344 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 RNF19AQ9NV58 838 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 STK32BQ9NY57 414 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 KIF16BQ96L93 1317 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 PCDH11XQ9BZA7 1347 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 PCDH11YQ9BZA8 1340 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 CRB1P82279 1406 aa6.42□□□□□ -1.38
LDLR-209ENST00000558528 MAP2P11137 1827 aaKnown RBP6.41□□□□□ -1.38
LDLR-209ENST00000558528 TNRC18O15417 2968 aaPredicted RBP6.41□□□□□ -1.38
LDLR-209ENST00000558528 ERVV-2B6SEH9 535 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 ERVH48-1M5A8F1 160 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 EIF1AYO14602 144 aaKnown RBP6.41□□□□□ -1.38
LDLR-209ENST00000558528 VAMP4O75379 141 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 POTEJP0CG39 1038 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 PHKG2P15735 406 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 HMGB2P26583 209 aaKnown RBP6.41□□□□□ -1.38
LDLR-209ENST00000558528 HTRA3P83110 453 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 DNM1Q05193 864 aaKnown RBP6.41□□□□□ -1.38
LDLR-209ENST00000558528 TCEAL1Q15170 157 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 TWISTNBQ3B726 338 aaPredicted RBP6.41□□□□□ -1.38
LDLR-209ENST00000558528 C11orf91Q3C1V1 193 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 ZKSCAN2Q63HK3 967 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 POTEHQ6S545 545 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 MCM10Q7L590 875 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 JAZF1Q86VZ6 243 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 IL17REQ8NFR9 667 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 NLGN2Q8NFZ4 835 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 RASGRP4Q8TDF6 673 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 EDEM1Q92611 657 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 SEC16BQ96JE7 1060 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 SETDB2Q96T68 719 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 SLC6A16Q9GZN6 736 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 C12orf49Q9H741 205 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms