RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 IRF5Q13568 498 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 ALX1Q15699 326 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 SLC9C2Q5TAH2 1124 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 CCDC102BQ68D86 513 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 TTLL5Q6EMB2 1281 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 IFNL1Q8IU54 200 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 TDRD7Q8NHU6 1098 aaKnown RBP8.48□□□□□ -1.05
VPS13C-206ENST00000558338 KCNG4Q8TDN1 519 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 PIBF1Q8WXW3 757 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 SYTL4Q96C24 671 aaPredicted RBP8.48□□□□□ -1.05
VPS13C-206ENST00000558338 C8orf76Q96K31 380 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 TMEM87BQ96K49 555 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 SLC4A9Q96Q91 983 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 UTP14AQ9BVJ6 771 aaKnown RBP8.48□□□□□ -1.05
VPS13C-206ENST00000558338 PUS7LQ9H0K6 701 aaKnown RBP8.48□□□□□ -1.05
VPS13C-206ENST00000558338 CHD4Q14839 1912 aa8.48□□□□□ -1.05
VPS13C-206ENST00000558338 UBN2Q6ZU65 1347 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 A0A1W2PQ27 194 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 A0A1W2PQ64 194 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 A0A1W2PQD8 194 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 RIOK3O14730 519 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 YEATS4O95619 227 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 PDE6AP16499 860 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 GNAT2P19087 354 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 FGFR2P21802 821 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ADD1P35611 737 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 EIF5P55010 431 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 HAND2P61296 217 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 FAM160A1Q05DH4 1040 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 CAMK4Q16566 473 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 STX1AQ16623 288 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 CCDC152Q4G0S7 254 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ANO6Q4KMQ2 910 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 CCAR1Q8IX12 1150 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ARHGEF1Q92888 912 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 AIDAQ96BJ3 306 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 MPHOSPH8Q99549 860 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 NCOA5Q9HCD5 579 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 RTEL1Q9NZ71 1219 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ANGEL1Q9UNK9 670 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ZNF652Q9Y2D9 606 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 SPATA31A1Q5TZJ5 1347 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ZNF532Q9HCE3 1301 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 DTNBO60941 627 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 IDH1O75874 414 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 IGHMBP2P38935 993 aaKnown RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 DDB1Q16531 1140 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 CKAP2LQ8IYA6 745 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 SMARCC1Q92922 1105 aaPredicted RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 CNNM2Q9H8M5 875 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 CBX8Q9HC52 389 aa8.47□□□□□ -1.05
VPS13C-206ENST00000558338 ORC3Q9UBD5 711 aaPredicted RBP8.47□□□□□ -1.05
VPS13C-206ENST00000558338 A0A0G2JLW4 131 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 GOLGA6L19H0YKK7 550 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 SH2B2O14492 632 aaPredicted RBP8.46□□□□□ -1.06
VPS13C-206ENST00000558338 CDC25BP30305 580 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 PHKA1P46020 1223 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 ME1P48163 572 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 ZNF165P49910 485 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 ANTXR2P58335 489 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 ADALQ6DHV7 355 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 CHST3Q7LGC8 479 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 SPATA5Q8NB90 893 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 FBXO18Q8NFZ0 1043 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 MRPS27Q92552 414 aaKnown RBP8.46□□□□□ -1.06
VPS13C-206ENST00000558338 USP28Q96RU2 1077 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 CDC5LQ99459 802 aaKnown RBP8.46□□□□□ -1.06
VPS13C-206ENST00000558338 MTA3Q9BTC8 594 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 PIH1D3Q9NQM4 214 aaKnown RBP8.46□□□□□ -1.06
VPS13C-206ENST00000558338 POLR3EQ9NVU0 708 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 ANO10Q9NW15 660 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 COL5A3P25940 1745 aaPredicted RBP8.46□□□□□ -1.06
VPS13C-206ENST00000558338 NID2Q14112 1375 aa8.46□□□□□ -1.06
VPS13C-206ENST00000558338 SLIT2O94813 1529 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 TCRBV5S4A2TA0A5A2 114 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 APPP05067 770 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 FDPSP14324 419 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 CRKLP46109 303 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 METAP2P50579 478 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 FOSBP53539 338 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 STK38Q15208 465 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SF3A1Q15459 793 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 PI16Q6UXB8 463 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 SYNE4Q8N205 404 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 FSIP1Q8NA03 581 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 WASF1Q92558 559 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 PRIMPOLQ96LW4 560 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 NACAP1Q9BZK3 213 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 KRT23Q9C075 422 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 NAT10Q9H0A0 1025 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 RYDENQ9NUL5 291 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 HPS5Q9UPZ3 1129 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 R3HCC1Q9Y3T6 440 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 MYO5AQ9Y4I1 1855 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 PNPLA7Q6ZV29 1317 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 STK36Q9NRP7 1315 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 LOC102724428A0A0B4J2F2 783 aa8.45□□□□□ -1.06
VPS13C-206ENST00000558338 PATL2C9JE40 543 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 RRP9O43818 475 aaKnown RBP8.45□□□□□ -1.06
VPS13C-206ENST00000558338 ATP6V1AP38606 617 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms