RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 IKBKEQ14164 716 aa9.7□□□□□ -0.86
RTF1-204ENST00000558117 NPAS4Q8IUM7 802 aa9.7□□□□□ -0.86
RTF1-204ENST00000558117 CCNJLQ8IV13 435 aa9.7□□□□□ -0.86
RTF1-204ENST00000558117 OSGEPQ9NPF4 335 aa9.7□□□□□ -0.86
RTF1-204ENST00000558117 METTL12A8MUP2 240 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 VWDEQ8N2E2 1590 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 GALNT11Q8NCW6 608 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 LRRC7Q96NW7 1537 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 TCF12Q99081 682 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 SCAPERQ9BY12 1400 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 TRAK1Q9UPV9 953 aa9.69□□□□□ -0.86
RTF1-204ENST00000558117 A0A096LPE4 126 aa9.68□□□□□ -0.86
RTF1-204ENST00000558117 A0A1W2PPZ6 126 aa9.68□□□□□ -0.86
RTF1-204ENST00000558117 ATP2B2Q01814 1243 aa9.68□□□□□ -0.86
RTF1-204ENST00000558117 C19orf57Q0VDD7 668 aa9.68□□□□□ -0.86
RTF1-204ENST00000558117 SUZ12Q15022 739 aaKnown RBP9.68□□□□□ -0.86
RTF1-204ENST00000558117 CNTLNQ9NXG0 1405 aa9.67□□□□□ -0.86
RTF1-204ENST00000558117 FOXD4L6Q3SYB3 417 aaPredicted RBP9.67□□□□□ -0.86
RTF1-204ENST00000558117 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.67□□□□□ -0.86
RTF1-204ENST00000558117 FOXD4L3Q6VB84 417 aaPredicted RBP9.67□□□□□ -0.86
RTF1-204ENST00000558117 VN1R5Q7Z5H4 357 aa9.67□□□□□ -0.86
RTF1-204ENST00000558117 AKTIPQ9H8T0 292 aa9.67□□□□□ -0.86
RTF1-204ENST00000558117 CFAP74Q9C0B2 1584 aa9.67□□□□□ -0.86
RTF1-204ENST00000558117 AGLP35573 1532 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 GRIA4P48058 902 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 IREB2P48200 963 aaKnown RBP9.66□□□□□ -0.86
RTF1-204ENST00000558117 MFAP1P55081 439 aaKnown RBP9.66□□□□□ -0.86
RTF1-204ENST00000558117 DUOXA2Q1HG44 320 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 SPRED3Q2MJR0 410 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 ACAD11Q709F0 780 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 WFDC12Q8WWY7 111 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 KLHDC7BQ96G42 594 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 PPP4R2Q9NY27 417 aa9.66□□□□□ -0.86
RTF1-204ENST00000558117 ZNF142P52746 1687 aaPredicted RBP9.65□□□□□ -0.86
RTF1-204ENST00000558117 LDHBP07195 334 aaKnown RBP9.65□□□□□ -0.86
RTF1-204ENST00000558117 NLRP12P59046 1061 aa9.65□□□□□ -0.86
RTF1-204ENST00000558117 DOC2BQ14184 412 aa9.65□□□□□ -0.86
RTF1-204ENST00000558117 GRM2Q14416 872 aa9.65□□□□□ -0.86
RTF1-204ENST00000558117 CLEC4MQ9H2X3 399 aaPredicted RBP9.65□□□□□ -0.86
RTF1-204ENST00000558117 RNF19AQ9NV58 838 aa9.65□□□□□ -0.86
RTF1-204ENST00000558117 CEP170BQ9Y4F5 1589 aaPredicted RBP9.65□□□□□ -0.86
RTF1-204ENST00000558117 FAM135BQ49AJ0 1406 aa9.65□□□□□ -0.87
RTF1-204ENST00000558117 ZMYM3Q14202 1370 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 NEURL4Q96JN8 1562 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 F8W735 103 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 SOX1O00570 391 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 EIF4EBP3O60516 100 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 ESRRAP11474 423 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 NOS3P29474 1203 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 TAGLNQ01995 201 aaKnown RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 PCDH1Q08174 1060 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 COL19A1Q14993 1142 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 EAPPQ56P03 285 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 ALG1LQ6GMV1 187 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 PRPF40BQ6NWY9 871 aaKnown RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 TMEM130Q8N3G9 435 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 GLIS3Q8NEA6 775 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 FBF1Q8TES7 1133 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 SOX17Q9H6I2 414 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.64□□□□□ -0.87
RTF1-204ENST00000558117 GOLGA3Q08378 1498 aa9.64□□□□□ -0.87
RTF1-204ENST00000558117 CDK12Q9NYV4 1490 aaPredicted RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 RNF17Q9BXT8 1623 aaKnown RBP9.64□□□□□ -0.87
RTF1-204ENST00000558117 RXRBP28702 533 aa9.63□□□□□ -0.87
RTF1-204ENST00000558117 ZNF772Q68DY9 489 aaPredicted RBP9.63□□□□□ -0.87
RTF1-204ENST00000558117 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.63□□□□□ -0.87
RTF1-204ENST00000558117 DDX54Q8TDD1 881 aaKnown RBP9.63□□□□□ -0.87
RTF1-204ENST00000558117 ABCB6Q9NP58 842 aa9.63□□□□□ -0.87
RTF1-204ENST00000558117 KCNK4Q9NYG8 393 aa9.63□□□□□ -0.87
RTF1-204ENST00000558117 REREQ9P2R6 1566 aa9.63□□□□□ -0.87
RTF1-204ENST00000558117 DDX3YO15523 660 aaKnown RBP9.62□□□□□ -0.87
RTF1-204ENST00000558117 WISP1O95388 367 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 GLB1P16278 677 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 ITPKAP23677 461 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 GSTM4Q03013 218 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 HGSNATQ68CP4 663 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 NXPE4Q6UWF7 544 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 DTHD1Q6ZMT9 781 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 FBXO33Q7Z6M2 555 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 UBASH3BQ8TF42 649 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 FOXD4L4Q8WXT5 416 aaPredicted RBP9.62□□□□□ -0.87
RTF1-204ENST00000558117 USP26Q9BXU7 913 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 BCO2Q9BYV7 579 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 TPSG1Q9NRR2 321 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 MYO3AQ8NEV4 1616 aa9.62□□□□□ -0.87
RTF1-204ENST00000558117 TMEM238LA0A1B0GVL6 79 aa9.61□□□□□ -0.87
RTF1-204ENST00000558117 ADAM11O75078 769 aa9.61□□□□□ -0.87
RTF1-204ENST00000558117 ALX3O95076 343 aa9.61□□□□□ -0.87
RTF1-204ENST00000558117 PTPN12Q05209 780 aaKnown RBP9.61□□□□□ -0.87
RTF1-204ENST00000558117 AGGF1Q8N302 714 aaeCLIP9.61□□□□□ -0.87
RTF1-204ENST00000558117 TP53INP1Q96A56 240 aa9.61□□□□□ -0.87
RTF1-204ENST00000558117 OSBPL7Q9BZF2 842 aa9.61□□□□□ -0.87
RTF1-204ENST00000558117 ZNF576Q9H609 170 aa9.61□□□□□ -0.87
RTF1-204ENST00000558117 TM4SF5O14894 197 aa9.6□□□□□ -0.87
RTF1-204ENST00000558117 FURINP09958 794 aa9.6□□□□□ -0.87
RTF1-204ENST00000558117 ERCC3P19447 782 aa9.6□□□□□ -0.87
RTF1-204ENST00000558117 FCGRTP55899 365 aa9.6□□□□□ -0.87
RTF1-204ENST00000558117 CEP41Q9BYV8 373 aa9.6□□□□□ -0.87
RTF1-204ENST00000558117 ZFYVE1Q9HBF4 777 aa9.6□□□□□ -0.87
RTF1-204ENST00000558117 DIP2CQ9Y2E4 1556 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms