RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 EFCAB6Q5THR3 1501 aa5.65□□□□□ -1.5
SYNE2-223ENST00000557005 MYO3AQ8NEV4 1616 aa5.65□□□□□ -1.5
SYNE2-223ENST00000557005 EFCAB8A8MWE9 144 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 MPHOSPH10O00566 681 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 ZNF853P0CG23 659 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 CCDC122Q5T0U0 273 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 IFIT1BQ5T764 474 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 NAA16Q6N069 864 aaPredicted RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 CLEC17AQ6ZS10 378 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 SEC63Q9UGP8 760 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 PHF8Q9UPP1 1060 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 RRP15Q9Y3B9 282 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 ADGRB3O60242 1522 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 GOLGA6CA6NDK9 693 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 PFKFB2O60825 505 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 CYP2E1P05181 493 aaPredicted RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 GOLGA6DP0CG33 693 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 RNASE9P60153 205 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 PRPF4BQ13523 1007 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 GOLGA5Q8TBA6 731 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 PI4K2BQ8TCG2 481 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 MRFAP1L1Q96HT8 127 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 KRT23Q9C075 422 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 GOLGA6AQ9NYA3 693 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 TRMT112Q9UI30 125 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 ERCC6L2Q5T890 1561 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 CDK12Q9NYV4 1490 aaPredicted RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 CCDC196A0A1B0GTZ2 297 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 VWA3AA6NCI4 1184 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 SOWAHDA6NJG2 315 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 HPDP32754 393 aaPredicted RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 HNRNPH2P55795 449 aaKnown RBP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 ARID5AQ03989 594 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 SF3A3Q12874 501 aaKnown RBP eCLIP5.65□□□□□ -1.51
SYNE2-223ENST00000557005 TERF2Q15554 542 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 DPCR1Q3MIW9 517 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 CCDC40Q4G0X9 1142 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 SLC9C2Q5TAH2 1124 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 ATL3Q6DD88 541 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 ATRIPQ8WXE1 791 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 SLF1Q9BQI6 1058 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 TSGA10Q9BZW7 698 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 USP44Q9H0E7 712 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 EPC1Q9H2F5 836 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 STAP2Q9UGK3 403 aa5.65□□□□□ -1.51
SYNE2-223ENST00000557005 PHLPP2Q6ZVD8 1323 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 TNRQ92752 1358 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 SNRPA1P09661 255 aaKnown RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 CYLC1P35663 651 aaPredicted RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 RBL2Q08999 1139 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 RESTQ13127 1097 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 ZNF827Q17R98 1081 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 HEATR3Q7Z4Q2 680 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 PROSER2Q86WR7 435 aaPredicted RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 UBLCP1Q8WVY7 318 aaPredicted RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 OSBPL3Q9H4L5 887 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 VAT1LQ9HCJ6 419 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 TMOD3Q9NYL9 352 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 CCDC194A0A1B0GVG4 234 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 SEPT7Q16181 437 aaKnown RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 OTUD6BQ8N6M0 293 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 NELFBQ8WX92 580 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 ARMT1Q9H993 441 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 CARMIL3Q8ND23 1372 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 MLH3Q9UHC1 1453 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 HECW2Q9P2P5 1572 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 ANKRD62A6NC57 917 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 NOP2P46087 812 aaKnown RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 C2orf54Q08AI8 447 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 ZRSR2Q15696 482 aaKnown RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 PPM1EQ8WY54 764 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 ANKRD7Q92527 254 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 KIAA1468Q9P260 1216 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 IQSEC3Q9UPP2 1182 aaPredicted RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 KIAA1210Q9ULL0 1709 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 FRMD3A2A2Y4 597 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 PRAMEF22A3QJZ6 481 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 EBAG9O00559 213 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 KRT83P78385 493 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 BEND3Q5T5X7 828 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 WWC2Q6AWC2 1192 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 GRAMD1CQ8IYS0 662 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 NFATC2IPQ8NCF5 419 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 SSH3Q8TE77 659 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 PSMB7Q99436 277 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 NAA15Q9BXJ9 866 aaKnown RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 FANCLQ9NW38 375 aa5.64□□□□□ -1.51
SYNE2-223ENST00000557005 TTF2Q9UNY4 1162 aaKnown RBP5.64□□□□□ -1.51
SYNE2-223ENST00000557005 EIF4A1P60842 406 aaKnown RBP5.63□□□□□ -1.51
SYNE2-223ENST00000557005 TOB2Q14106 344 aaPredicted RBP5.63□□□□□ -1.51
SYNE2-223ENST00000557005 SPTY2D1Q68D10 685 aaPredicted RBP5.63□□□□□ -1.51
SYNE2-223ENST00000557005 GBP6Q6ZN66 633 aa5.63□□□□□ -1.51
SYNE2-223ENST00000557005 KAT14Q9H8E8 782 aa5.63□□□□□ -1.51
SYNE2-223ENST00000557005 DDX41Q9UJV9 622 aaKnown RBP5.63□□□□□ -1.51
SYNE2-223ENST00000557005 FAN1Q9Y2M0 1017 aa5.63□□□□□ -1.51
SYNE2-223ENST00000557005 RTL9Q8NET4 1388 aa5.63□□□□□ -1.51
SYNE2-223ENST00000557005 CUTAO60888 179 aa5.63□□□□□ -1.51
SYNE2-223ENST00000557005 TACC1O75410 805 aa5.63□□□□□ -1.51
SYNE2-223ENST00000557005 SSR1P43307 286 aaKnown RBP5.63□□□□□ -1.51
SYNE2-223ENST00000557005 ADALQ6DHV7 355 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms