RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SOGA1O94964 1423 aa4.01□□□□□ -1.77
SLIRP-208ENST00000556956 PRDM2Q13029 1718 aa4.01□□□□□ -1.77
SLIRP-208ENST00000556956 CCDC88BA6NC98 1476 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 ZBTB39O15060 712 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 EIF4EBP3O60516 100 aaPredicted RBP4□□□□□ -1.77
SLIRP-208ENST00000556956 DNM1Q05193 864 aaKnown RBP4□□□□□ -1.77
SLIRP-208ENST00000556956 NFIXQ14938 502 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 C8orf34Q49A92 452 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 CDPF1Q6NVV7 123 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 KLHL23Q8NBE8 558 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 FLAD1Q8NFF5 587 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 NUDT16Q96DE0 195 aaKnown RBP4□□□□□ -1.77
SLIRP-208ENST00000556956 BORCS6Q96GS4 357 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 RUSC1Q9BVN2 902 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 ZCCHC4Q9H5U6 513 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 PEG3Q9GZU2 1588 aa4□□□□□ -1.77
SLIRP-208ENST00000556956 CEP164Q9UPV0 1460 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 CLIP1P30622 1438 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 VPS8Q8N3P4 1428 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 NPR3P17342 541 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 BMP7P18075 431 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 CES1P23141 567 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 EIF1AXP47813 144 aaKnown RBP3.99□□□□□ -1.77
SLIRP-208ENST00000556956 CABP4P57796 275 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 TRIP4Q15650 581 aaPredicted RBP3.99□□□□□ -1.77
SLIRP-208ENST00000556956 CEP135Q66GS9 1140 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 EDEM1Q92611 657 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 C1orf115Q9H7X2 142 aa3.99□□□□□ -1.77
SLIRP-208ENST00000556956 DHX57Q6P158 1386 aaKnown RBP3.99□□□□□ -1.77
SLIRP-208ENST00000556956 CCER2I3L3R5 266 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 PDGFAP04085 211 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 PTPRAP18433 802 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 CDC27P30260 824 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 FYB2Q5VWT5 728 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 DUSP27Q5VZP5 1158 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 PBX4Q9BYU1 374 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 KCNK12Q9HB15 430 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 SLAIN2Q9P270 581 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 EGFL7Q9UHF1 273 aa3.98□□□□□ -1.77
SLIRP-208ENST00000556956 SMARCA2P51531 1590 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 EIF4G1Q04637 1599 aaKnown RBP3.97□□□□□ -1.77
SLIRP-208ENST00000556956 FANCIQ9NVI1 1328 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 TOP2AP11388 1531 aaKnown RBP3.97□□□□□ -1.77
SLIRP-208ENST00000556956 NUAK1O60285 661 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 KIF4AO95239 1232 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 ABL1P00519 1130 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 EDN3P14138 238 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 EPHA1P21709 976 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 MPSTP25325 297 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 ARL4DP49703 201 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 FAM26DQ5JW98 314 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 ERICH6BQ5W0A0 696 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 ATG14Q6ZNE5 492 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 ATCAYQ86WG3 371 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 CEP120Q8N960 986 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 WNT8BQ93098 351 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 TIMELESSQ9UNS1 1208 aa3.97□□□□□ -1.77
SLIRP-208ENST00000556956 CDK11AQ9UQ88 783 aaPredicted RBP3.97□□□□□ -1.77
SLIRP-208ENST00000556956 BAZ1BQ9UIG0 1483 aaKnown RBP3.97□□□□□ -1.77
SLIRP-208ENST00000556956 CNTNAP4Q9C0A0 1308 aa3.96□□□□□ -1.77
SLIRP-208ENST00000556956 ANP32CO43423 234 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 PHACTR2O75167 634 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 NLRP12P59046 1061 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 PDE3BQ13370 1112 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 C12orf50Q8NA57 414 aaPredicted RBP3.96□□□□□ -1.78
SLIRP-208ENST00000556956 CXorf38Q8TB03 319 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 CITED4Q96RK1 184 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 ARID3AQ99856 593 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 IRF2BPLQ9H1B7 796 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 SEC31BQ9NQW1 1179 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 TMEM63CQ9P1W3 806 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 SALL4Q9UJQ4 1053 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 BRPF3Q9ULD4 1205 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 POLIQ9UNA4 740 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 ABCC8Q09428 1581 aa3.96□□□□□ -1.78
SLIRP-208ENST00000556956 RUSC2Q8N2Y8 1516 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 NDUFB5O43674 189 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 ICMTO60725 284 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 TIAF1O95411 115 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 INSRRP14616 1297 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 ATP11AP98196 1134 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 PUM1Q14671 1186 aaKnown RBP eCLIP3.95□□□□□ -1.784e-10■■■■□ 22.6
SLIRP-208ENST00000556956 GLYCTKQ8IVS8 523 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 C1orf127Q8N9H9 656 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 FBXO15Q8NCQ5 510 aaPredicted RBP3.95□□□□□ -1.78
SLIRP-208ENST00000556956 SNX29Q8TEQ0 813 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 MISP3Q96FF7 219 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 KCNC2Q96PR1 638 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 RASSF4Q9H2L5 321 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 GGNBP2Q9H3C7 697 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 PRDM7Q9NQW5 492 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 SH2B1Q9NRF2 756 aaPredicted RBP3.95□□□□□ -1.78
SLIRP-208ENST00000556956 RTEL1Q9NZ71 1219 aa3.95□□□□□ -1.78
SLIRP-208ENST00000556956 PDE2AO00408 941 aaPredicted RBP3.94□□□□□ -1.78
SLIRP-208ENST00000556956 TNFRSF21O75509 655 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 TMEM253P0C7T8 217 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 DRD2P14416 443 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 LINC00310P59036 64 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 PIP4K2BP78356 416 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 COL13A1Q5TAT6 717 aaPredicted RBP3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms