RNA–Protein interactions for RNA: ENST00000556374.5

ATXN3-241, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,083 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-241ENST00000556374 GRIK1P39086 918 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 DNM1Q05193 864 aaKnown RBP6.17□□□□□ -1.42
ATXN3-241ENST00000556374 NFIAQ12857 509 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 B4GALNT3Q6L9W6 998 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 AGGF1Q8N302 714 aaeCLIP6.17□□□□□ -1.42
ATXN3-241ENST00000556374 GTF3C2Q8WUA4 911 aaPredicted RBP6.17□□□□□ -1.42
ATXN3-241ENST00000556374 UTP4Q969X6 686 aaKnown RBP6.17□□□□□ -1.42
ATXN3-241ENST00000556374 DBNDD2Q9BQY9 259 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 CHRDQ9H2X0 955 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 GGNBP2Q9H3C7 697 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 SAMD9Q5K651 1589 aa6.17□□□□□ -1.42
ATXN3-241ENST00000556374 CASKIN1Q8WXD9 1431 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 TRAPPC8Q9Y2L5 1435 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 KRTAP4-8A0A0G2JLE6 195 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 WISP1O95388 367 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 FKBP4Q02790 459 aaKnown RBP eCLIP6.16□□□□□ -1.42
ATXN3-241ENST00000556374 C19orf57Q0VDD7 668 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 ATCAYQ86WG3 371 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 FOXD4L4Q8WXT5 416 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-241ENST00000556374 NXPE3Q969Y0 559 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 KLHDC7BQ96G42 594 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 BHLHE41Q9C0J9 482 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-241ENST00000556374 SUGCTQ9HAC7 445 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 PCMTD2Q9NV79 361 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 KCNK4Q9NYG8 393 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 EGFL7Q9UHF1 273 aa6.16□□□□□ -1.42
ATXN3-241ENST00000556374 NUP153P49790 1475 aaKnown RBP6.15□□□□□ -1.42
ATXN3-241ENST00000556374 SYNMO15061 1565 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 NEURL4Q96JN8 1562 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 SART1O43290 800 aaKnown RBP6.15□□□□□ -1.42
ATXN3-241ENST00000556374 ADAM11O75078 769 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 TNFRSF21O75509 655 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 MPSTP25325 297 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 FAM50AQ14320 339 aaKnown RBP6.15□□□□□ -1.42
ATXN3-241ENST00000556374 C8orf34Q49A92 452 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 ZDHHC13Q8IUH4 622 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 FAM20CQ8IXL6 584 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 ZFYVE1Q9HBF4 777 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 SH2B1Q9NRF2 756 aaPredicted RBP6.15□□□□□ -1.42
ATXN3-241ENST00000556374 USTQ9Y2C2 406 aa6.15□□□□□ -1.42
ATXN3-241ENST00000556374 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.15□□□□□ -1.43
ATXN3-241ENST00000556374 NPATQ14207 1427 aa6.15□□□□□ -1.43
ATXN3-241ENST00000556374 CCDC18Q5T9S5 1454 aa6.15□□□□□ -1.43
ATXN3-241ENST00000556374 PHACTR2O75167 634 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 NEFLP07196 543 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 HP1BP3Q5SSJ5 553 aaPredicted RBP6.14□□□□□ -1.43
ATXN3-241ENST00000556374 TXNDC11Q6PKC3 985 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 ADAMTSL4Q6UY14 1074 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 GJD3Q8N144 294 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 SMG8Q8ND04 991 aaKnown RBP6.14□□□□□ -1.43
ATXN3-241ENST00000556374 GIMAP7Q8NHV1 300 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 OSMRQ99650 979 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 C7orf69Q9H7B7 122 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 KANSL3Q9P2N6 904 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 POLIQ9UNA4 740 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 MTUS2Q5JR59 1369 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 PTPRKQ15262 1439 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 CNTLNQ9NXG0 1405 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 ZNF518AQ6AHZ1 1483 aa6.14□□□□□ -1.43
ATXN3-241ENST00000556374 FDX2Q6P4F2 183 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 RUSC1Q9BVN2 902 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 CARD10Q9BWT7 1032 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 TMPRSS13Q9BYE2 586 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 CYP4F12Q9HCS2 524 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 RGS17Q9UGC6 210 aaPredicted RBP6.13□□□□□ -1.43
ATXN3-241ENST00000556374 TIMELESSQ9UNS1 1208 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 AMOTL2Q9Y2J4 779 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 SCAPERQ9BY12 1400 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 GCC2Q8IWJ2 1684 aa6.13□□□□□ -1.43
ATXN3-241ENST00000556374 TOM1O60784 492 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 SPINK2P20155 84 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 CLTCQ00610 1675 aaKnown RBP6.12□□□□□ -1.43
ATXN3-241ENST00000556374 IKBKEQ14164 716 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 EXOSC6Q5RKV6 272 aaKnown RBP6.12□□□□□ -1.43
ATXN3-241ENST00000556374 FGD6Q6ZV73 1430 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 VN1R5Q7Z5H4 357 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 VWDEQ8N2E2 1590 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 CCDC82Q8N4S0 544 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 TONSLQ96HA7 1378 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 PTPN23Q9H3S7 1636 aa6.12□□□□□ -1.43
ATXN3-241ENST00000556374 STRCP1A6NGW2 1772 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 SHANK2Q9UPX8 1470 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 SOX1O00570 391 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-241ENST00000556374 FZD6O60353 706 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 BMP3P12645 472 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 MCTP1Q6DN14 999 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 BEND4Q6ZU67 534 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 DTX1Q86Y01 620 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 TRIM42Q8IWZ5 723 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 CITED4Q96RK1 184 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 ZKSCAN3Q9BRR0 538 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 ZFYVE28Q9HCC9 887 aa6.11□□□□□ -1.43
ATXN3-241ENST00000556374 ITSN2Q9NZM3 1697 aa6.1□□□□□ -1.43
ATXN3-241ENST00000556374 DNMT1P26358 1616 aaKnown RBP6.1□□□□□ -1.43
ATXN3-241ENST00000556374 SYNGAP1Q96PV0 1343 aa6.1□□□□□ -1.43
ATXN3-241ENST00000556374 PRR19A6NJB7 356 aa6.1□□□□□ -1.43
ATXN3-241ENST00000556374 EREGO14944 169 aa6.1□□□□□ -1.43
ATXN3-241ENST00000556374 DDX3YO15523 660 aaKnown RBP6.1□□□□□ -1.43
ATXN3-241ENST00000556374 TIAF1O95411 115 aa6.1□□□□□ -1.43
ATXN3-241ENST00000556374 PDE4CQ08493 712 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms