RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.12□□□□□ -1.43
ATXN3-240ENST00000556339 RIMS1Q86UR5 1692 aaKnown RBP6.11□□□□□ -1.43
ATXN3-240ENST00000556339 HECW1Q76N89 1606 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 TTC37Q6PGP7 1564 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 MAGI2Q86UL8 1455 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 TROQ12816 1431 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-240ENST00000556339 PRR19A6NJB7 356 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 NFKBIEO00221 500 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 USP11P51784 963 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 NFKBIBQ15653 356 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 SGO2Q562F6 1265 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 GTF3C2Q8WUA4 911 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-240ENST00000556339 PIM2Q9P1W9 311 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 CFDP1Q9UEE9 299 aaPredicted RBP6.11□□□□□ -1.43
ATXN3-240ENST00000556339 POLIQ9UNA4 740 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 RICTORQ6R327 1708 aa6.11□□□□□ -1.43
ATXN3-240ENST00000556339 MADDQ8WXG6 1647 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 EREGO14944 169 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 YBX3P16989 372 aaKnown RBP eCLIP6.1□□□□□ -1.43
ATXN3-240ENST00000556339 HGSNATQ68CP4 663 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 PAOXQ6QHF9 649 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 SNX29Q8TEQ0 813 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 ZKSCAN3Q9BRR0 538 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 YIPF2Q9BWQ6 316 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 SLAIN2Q9P270 581 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 MTMR7Q9Y216 660 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 MYO5CQ9NQX4 1742 aa6.1□□□□□ -1.43
ATXN3-240ENST00000556339 SPAG9O60271 1321 aaKnown RBP6.09□□□□□ -1.43
ATXN3-240ENST00000556339 FAM95CA0A1B0GW59 222 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 MEGF11A6BM72 1044 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 SOX1O00570 391 aaPredicted RBP6.09□□□□□ -1.43
ATXN3-240ENST00000556339 ADAMTS4O75173 837 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 USP5P45974 858 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 GSTM4Q03013 218 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 EHHADHQ08426 723 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 MTMR3Q13615 1198 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 GGT6Q6P531 493 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 NXPE3Q969Y0 559 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 CHRDQ9H2X0 955 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 KIF14Q15058 1648 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 FRMPD1Q5SYB0 1578 aa6.09□□□□□ -1.43
ATXN3-240ENST00000556339 C9orf84Q5VXU9 1444 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 MTUS2Q5JR59 1369 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 CCNB3Q8WWL7 1395 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 LOC100289279A0A1B0GTE1 492 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 TNFRSF21O75509 655 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 METTL22Q9BUU2 404 aaPredicted RBP6.08□□□□□ -1.44
ATXN3-240ENST00000556339 ARHGEF40Q8TER5 1519 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 ZNF518AQ6AHZ1 1483 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 CASKIN1Q8WXD9 1431 aa6.08□□□□□ -1.44
ATXN3-240ENST00000556339 PCF11O94913 1555 aaKnown RBP6.07□□□□□ -1.44
ATXN3-240ENST00000556339 EIF4EBP3O60516 100 aaPredicted RBP6.07□□□□□ -1.44
ATXN3-240ENST00000556339 FAM13AO94988 1023 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 HOXA10P31260 410 aaPredicted RBP6.07□□□□□ -1.44
ATXN3-240ENST00000556339 VN1R5Q7Z5H4 357 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 KRTAP19-1Q8IUB9 90 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 SMG8Q8ND04 991 aaKnown RBP6.07□□□□□ -1.44
ATXN3-240ENST00000556339 FBLIM1Q8WUP2 373 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 FMNL2Q96PY5 1086 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 TMPRSS13Q9BYE2 586 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 FOXD3Q9UJU5 478 aaPredicted RBP6.07□□□□□ -1.44
ATXN3-240ENST00000556339 AMOTL2Q9Y2J4 779 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 FER1L4A9Z1Z3 1794 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 CCDC18Q5T9S5 1454 aa6.07□□□□□ -1.44
ATXN3-240ENST00000556339 ZMYM4Q5VZL5 1548 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 ABL1P00519 1130 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 F13BP05160 661 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 DRD2P14416 443 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 CPSF6Q16630 551 aaKnown RBP eCLIP6.06□□□□□ -1.44
ATXN3-240ENST00000556339 EXOSC6Q5RKV6 272 aaKnown RBP6.06□□□□□ -1.44
ATXN3-240ENST00000556339 TBC1D32Q96NH3 1257 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 SOX17Q9H6I2 414 aaPredicted RBP6.06□□□□□ -1.44
ATXN3-240ENST00000556339 SUGCTQ9HAC7 445 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 TRAPPC8Q9Y2L5 1435 aa6.06□□□□□ -1.44
ATXN3-240ENST00000556339 LMTK3Q96Q04 1460 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 LOC105371045A0A1W2PR82 267 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 CYP26A1O43174 497 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 ESRRAP11474 423 aaPredicted RBP6.05□□□□□ -1.44
ATXN3-240ENST00000556339 FOSL1P15407 271 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 TP53INP2Q8IXH6 220 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 BHLHE41Q9C0J9 482 aaPredicted RBP6.05□□□□□ -1.44
ATXN3-240ENST00000556339 LATS2Q9NRM7 1088 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 UHRF1BP1Q6BDS2 1440 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 CDC42BPBQ9Y5S2 1711 aa6.05□□□□□ -1.44
ATXN3-240ENST00000556339 TIAF1O95411 115 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 TSPY4P0CV99 314 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 TSPY10P0CW01 314 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 RAB6AP20340 208 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 HP1BP3Q5SSJ5 553 aaPredicted RBP6.04□□□□□ -1.44
ATXN3-240ENST00000556339 CDPF1Q6NVV7 123 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 VSIG10LQ86VR7 867 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 ABI1Q8IZP0 508 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 RAD18Q9NS91 495 aa6.04□□□□□ -1.44
ATXN3-240ENST00000556339 FYCO1Q9BQS8 1478 aa6.03□□□□□ -1.44
ATXN3-240ENST00000556339 MLH3Q9UHC1 1453 aa6.03□□□□□ -1.44
ATXN3-240ENST00000556339 ZNF644Q9H582 1327 aaPredicted RBP6.03□□□□□ -1.44
ATXN3-240ENST00000556339 METTL12A8MUP2 240 aa6.03□□□□□ -1.44
ATXN3-240ENST00000556339 KIF3BO15066 747 aa6.03□□□□□ -1.44
ATXN3-240ENST00000556339 POLR3DP05423 398 aaPredicted RBP6.03□□□□□ -1.44
ATXN3-240ENST00000556339 SOX4Q06945 474 aaPredicted RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms