RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 DEAF1O75398 565 aaPredicted RBP8.64□□□□□ -1.03
LINC00643-203ENST00000555518 SASH3O75995 380 aa8.64□□□□□ -1.03
LINC00643-203ENST00000555518 KCNA6P17658 529 aa8.64□□□□□ -1.03
LINC00643-203ENST00000555518 PLAURQ03405 335 aa8.64□□□□□ -1.03
LINC00643-203ENST00000555518 MCTP1Q6DN14 999 aa8.64□□□□□ -1.03
LINC00643-203ENST00000555518 ANKMY2Q8IV38 441 aa8.64□□□□□ -1.03
LINC00643-203ENST00000555518 POGKQ9P215 609 aa8.64□□□□□ -1.03
LINC00643-203ENST00000555518 STRCP1A6NGW2 1772 aa8.63□□□□□ -1.03
LINC00643-203ENST00000555518 PTCD1O75127 700 aaKnown RBP8.63□□□□□ -1.03
LINC00643-203ENST00000555518 PSAPP07602 524 aa8.63□□□□□ -1.03
LINC00643-203ENST00000555518 FSTP19883 344 aa8.63□□□□□ -1.03
LINC00643-203ENST00000555518 SOX18P35713 384 aa8.63□□□□□ -1.03
LINC00643-203ENST00000555518 PANK3Q9H999 370 aa8.63□□□□□ -1.03
LINC00643-203ENST00000555518 ATP7BP35670 1465 aa8.63□□□□□ -1.03
LINC00643-203ENST00000555518 TOPAZ1Q8N9V7 1692 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 PRR36Q9H6K5 1346 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L15C9J2P7 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L10C9JJH3 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L13C9JLJ4 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L12C9JPN9 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L11C9JVI0 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L21D6R901 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L18D6R9N7 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L22D6RA61 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L17D6RBQ6 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L19D6RCP7 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L20D6RJB6 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 PAX4O43316 350 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 GHRHP01286 108 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 HOXD8P13378 290 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-203ENST00000555518 MLLT1Q03111 559 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP17L24Q0WX57 530 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 CRTC2Q53ET0 693 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-203ENST00000555518 PLD4Q96BZ4 506 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 CDK19Q9BWU1 502 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 PRKRIP1Q9H875 184 aaPredicted RBP8.62□□□□□ -1.03
LINC00643-203ENST00000555518 VRTNQ9H8Y1 702 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 QTRT2Q9H974 415 aaKnown RBP8.62□□□□□ -1.03
LINC00643-203ENST00000555518 RTCBQ9Y3I0 505 aaKnown RBP8.62□□□□□ -1.03
LINC00643-203ENST00000555518 NALCNQ8IZF0 1738 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 USP32Q8NFA0 1604 aa8.62□□□□□ -1.03
LINC00643-203ENST00000555518 NINLQ9Y2I6 1382 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 LOC102724428A0A0B4J2F2 783 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 WEE1P30291 646 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 SIK1P57059 783 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 SLC12A5Q9H2X9 1139 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 NKTRP30414 1462 aaKnown RBP8.61□□□□□ -1.03
LINC00643-203ENST00000555518 CDC42BPGQ6DT37 1551 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 ANKRD36BQ8N2N9 1353 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 PARD3Q8TEW0 1356 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 NPC1L1Q9UHC9 1359 aa8.61□□□□□ -1.03
LINC00643-203ENST00000555518 F8W735 103 aaPredicted RBP8.6□□□□□ -1.03
LINC00643-203ENST00000555518 ANP32CO43423 234 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 XYLBO75191 536 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 Q6ZS46 218 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 PROSER2Q86WR7 435 aaPredicted RBP8.6□□□□□ -1.03
LINC00643-203ENST00000555518 PPP1R12CQ9BZL4 782 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 ADGRL3Q9HAR2 1447 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 FMN2Q9NZ56 1722 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 A0A1W2PP64 1363 aa8.6□□□□□ -1.03
LINC00643-203ENST00000555518 CCER2I3L3R5 266 aa8.59□□□□□ -1.03
LINC00643-203ENST00000555518 TXKP42681 527 aa8.59□□□□□ -1.03
LINC00643-203ENST00000555518 SRPK2P78362 688 aaKnown RBP8.59□□□□□ -1.03
LINC00643-203ENST00000555518 IL22RA1Q8N6P7 574 aa8.59□□□□□ -1.03
LINC00643-203ENST00000555518 CPSF1Q10570 1443 aaKnown RBP8.59□□□□□ -1.03
LINC00643-203ENST00000555518 NSD3Q9BZ95 1437 aa8.59□□□□□ -1.03
LINC00643-203ENST00000555518 CD97P48960 835 aa8.58□□□□□ -1.04
LINC00643-203ENST00000555518 HFE2Q6ZVN8 426 aa8.58□□□□□ -1.04
LINC00643-203ENST00000555518 FNBP4Q8N3X1 1017 aaPredicted RBP8.58□□□□□ -1.04
LINC00643-203ENST00000555518 CALR3Q96L12 384 aaKnown RBP8.58□□□□□ -1.04
LINC00643-203ENST00000555518 PPIP5K1Q6PFW1 1433 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 ANKARQ7Z5J8 1434 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 OPLAHO14841 1288 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 CCDC184Q52MB2 194 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 GDF6Q6KF10 455 aaPredicted RBP8.57□□□□□ -1.04
LINC00643-203ENST00000555518 NUDT16Q96DE0 195 aaKnown RBP8.57□□□□□ -1.04
LINC00643-203ENST00000555518 ZMYND15Q9H091 742 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 RAXQ9Y2V3 346 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 AKAP12Q02952 1782 aa8.57□□□□□ -1.04
LINC00643-203ENST00000555518 KTN1Q86UP2 1357 aaKnown RBP8.57□□□□□ -1.04
LINC00643-203ENST00000555518 NRKQ7Z2Y5 1582 aa8.56□□□□□ -1.04
LINC00643-203ENST00000555518 TREML1Q86YW5 311 aa8.56□□□□□ -1.04
LINC00643-203ENST00000555518 CMTR1Q8N1G2 835 aaKnown RBP8.56□□□□□ -1.04
LINC00643-203ENST00000555518 TMC1Q8TDI8 760 aa8.56□□□□□ -1.04
LINC00643-203ENST00000555518 CEP41Q9BYV8 373 aa8.56□□□□□ -1.04
LINC00643-203ENST00000555518 MON2Q7Z3U7 1717 aa8.56□□□□□ -1.04
LINC00643-203ENST00000555518 XIRP1Q702N8 1843 aaKnown RBP8.56□□□□□ -1.04
LINC00643-203ENST00000555518 NCOA3Q9Y6Q9 1424 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 COBLO75128 1261 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 GLB1P16278 677 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 IRAK1P51617 712 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 SETDB1Q15047 1291 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 RALBP1Q15311 655 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 UVSSAQ2YD98 709 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 RGL4Q8IZJ4 473 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 FAM13BQ9NYF5 915 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 STOML1Q9UBI4 398 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 KNSTRNQ9Y448 316 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 PPME1Q9Y570 386 aa8.55□□□□□ -1.04
LINC00643-203ENST00000555518 RGPD8O14715 1765 aaPredicted RBP8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms