RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 GPR75-ASB3A0A0A6YYF3 556 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 IGSF3O75054 1194 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 LDHCP07864 332 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 SAPCD2Q86UD0 394 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 KLRG1Q96E93 195 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 TMOD2Q9NZR1 351 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 SSC5DA1L4H1 1573 aa17.32■□□□□ 0.36
SHMT2-217ENST00000555116 ANKRD45Q5TZF3 282 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 C2orf69Q8N8R5 385 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 TEPSINQ96N21 525 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 BOLA2Q9H3K6 86 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 ECHDC1Q9NTX5 307 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 USP40Q9NVE5 1235 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 MKRN1Q9UHC7 482 aaKnown RBP17.31■□□□□ 0.36
SHMT2-217ENST00000555116 BTDP43251 543 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 FAM83AQ86UY5 434 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 OTUD7AQ8TE49 926 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-217ENST00000555116 DNAJC2Q99543 621 aaKnown RBP17.31■□□□□ 0.36
SHMT2-217ENST00000555116 HAUS7Q99871 368 aa17.31■□□□□ 0.36
SHMT2-217ENST00000555116 RFX7Q2KHR2 1363 aa17.3■□□□□ 0.36
SHMT2-217ENST00000555116 TNNI2P48788 182 aa17.3■□□□□ 0.36
SHMT2-217ENST00000555116 RHBDL3P58872 404 aa17.3■□□□□ 0.36
SHMT2-217ENST00000555116 DEFB115Q30KQ5 88 aa17.3■□□□□ 0.36
SHMT2-217ENST00000555116 NBPF12Q5TAG4 269 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-217ENST00000555116 NAA16Q6N069 864 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-217ENST00000555116 CDAN1Q8IWY9 1227 aa17.3■□□□□ 0.36
SHMT2-217ENST00000555116 EDC3Q96F86 508 aaKnown RBP17.3■□□□□ 0.36
SHMT2-217ENST00000555116 TMEM39BQ9GZU3 492 aa17.3■□□□□ 0.36
SHMT2-217ENST00000555116 FOCADQ5VW36 1801 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 GOLIM4O00461 696 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 IDH1O75874 414 aaKnown RBP17.29■□□□□ 0.36
SHMT2-217ENST00000555116 FKBP1BP68106 108 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 NFIAQ12857 509 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 TTF1Q15361 905 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-217ENST00000555116 ADGRA1Q86SQ6 560 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 PPP4R2Q9NY27 417 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 SALL3Q9BXA9 1300 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 NF2P35240 595 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 HUNKP57058 714 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 MOB2Q70IA6 237 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 HHIPL1Q96JK4 782 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 PAG1Q9NWQ8 432 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 FAM198AQ9UFP1 575 aa17.29■□□□□ 0.36
SHMT2-217ENST00000555116 MAP3K12Q12852 859 aa17.28■□□□□ 0.36
SHMT2-217ENST00000555116 SUPT20HL1Q3ZLR7 823 aa17.28■□□□□ 0.36
SHMT2-217ENST00000555116 TSHZ3Q63HK5 1081 aa17.28■□□□□ 0.36
SHMT2-217ENST00000555116 GPATCH3Q96I76 525 aa17.28■□□□□ 0.36
SHMT2-217ENST00000555116 IDI2Q9BXS1 227 aa17.28■□□□□ 0.36
SHMT2-217ENST00000555116 RPAP1Q9BWH6 1393 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-217ENST00000555116 WDHD1O75717 1129 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-217ENST00000555116 CYP7A1P22680 504 aa17.27■□□□□ 0.36
SHMT2-217ENST00000555116 VEGFBP49765 207 aa17.27■□□□□ 0.36
SHMT2-217ENST00000555116 MAGEB6Q8N7X4 407 aa17.27■□□□□ 0.36
SHMT2-217ENST00000555116 FAM151AQ8WW52 585 aa17.27■□□□□ 0.36
SHMT2-217ENST00000555116 OTOFQ9HC10 1997 aa17.27■□□□□ 0.36
SHMT2-217ENST00000555116 TTC41PQ6P2S7 1318 aa17.27■□□□□ 0.35
SHMT2-217ENST00000555116 MAP4K4O95819 1239 aaPredicted RBP17.27■□□□□ 0.35
SHMT2-217ENST00000555116 PPP4CP60510 307 aa17.27■□□□□ 0.35
SHMT2-217ENST00000555116 ZBTB47Q9UFB7 747 aaPredicted RBP17.27■□□□□ 0.35
SHMT2-217ENST00000555116 THSD7BQ9C0I4 1608 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 UBE2Q2LH0YL09 131 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 RGS3P49796 1198 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 TCP10Q12799 353 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 PRKG1Q13976 671 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 B4GALNT3Q6L9W6 998 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 TMED8Q6PL24 325 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-217ENST00000555116 ZFPM1Q8IX07 1006 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 PI4K2BQ8TCG2 481 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 DDX4Q9NQI0 724 aaKnown RBP17.26■□□□□ 0.35
SHMT2-217ENST00000555116 FZD1Q9UP38 647 aa17.26■□□□□ 0.35
SHMT2-217ENST00000555116 ENTPD3O75355 529 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 PDE6AP16499 860 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 MX1P20591 662 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 NUCB1Q02818 461 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 TTLL12Q14166 644 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-217ENST00000555116 MAP3K11Q16584 847 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 CYP4F22Q6NT55 531 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 ARMC9Q7Z3E5 817 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 JMYQ8N9B5 988 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 CAPNS2Q96L46 248 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 LNPKQ9C0E8 428 aa17.25■□□□□ 0.35
SHMT2-217ENST00000555116 AATFQ9NY61 560 aaKnown RBP eCLIP17.25■□□□□ 0.35
SHMT2-217ENST00000555116 NPM3O75607 178 aaKnown RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 BAG3O95817 575 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 SH3RF3Q8TEJ3 882 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 NOL10Q9BSC4 688 aaKnown RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 STAP2Q9UGK3 403 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 ANGEL1Q9UNK9 670 aaKnown RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 WDR33Q9C0J8 1336 aaKnown RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 TCRBV5S4A2TA0A5A2 114 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 PPP1R12BO60237 982 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 USP2O75604 605 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 DYNLL1P63167 89 aaKnown RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 LDLRAD1Q5T700 205 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 SLC9C2Q5TAH2 1124 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 RGMBQ6NW40 437 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 PAXIP1Q6ZW49 1069 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-217ENST00000555116 CHD1LQ86WJ1 897 aa17.24■□□□□ 0.35
SHMT2-217ENST00000555116 ERC2O15083 957 aa17.23■□□□□ 0.35
SHMT2-217ENST00000555116 GLRX3O76003 335 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms