RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 RAD18Q9NS91 495 aa8.52□□□□□ -1.05
SCFD1-211ENST00000554437 LRRC14Q15048 493 aa8.51□□□□□ -1.05
SCFD1-211ENST00000554437 MAP1SQ66K74 1059 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-211ENST00000554437 FDX2Q6P4F2 183 aa8.51□□□□□ -1.05
SCFD1-211ENST00000554437 GRIN3AQ8TCU5 1115 aa8.51□□□□□ -1.05
SCFD1-211ENST00000554437 CEP41Q9BYV8 373 aa8.51□□□□□ -1.05
SCFD1-211ENST00000554437 CCDC86Q9H6F5 360 aaKnown RBP8.51□□□□□ -1.05
SCFD1-211ENST00000554437 CYP4F12Q9HCS2 524 aa8.51□□□□□ -1.05
SCFD1-211ENST00000554437 RLBP1P12271 317 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 LIG1P18858 919 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 HNRNPUQ00839 825 aaKnown RBP eCLIP8.5□□□□□ -1.05
SCFD1-211ENST00000554437 LDLRAD1Q5T700 205 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 ANKRD34AQ69YU3 496 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 LLGL2Q6P1M3 1020 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 C12orf50Q8NA57 414 aaPredicted RBP8.5□□□□□ -1.05
SCFD1-211ENST00000554437 KRT82Q9NSB4 513 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 CYP8B1Q9UNU6 501 aa8.5□□□□□ -1.05
SCFD1-211ENST00000554437 SART1O43290 800 aaKnown RBP8.49□□□□□ -1.05
SCFD1-211ENST00000554437 RECKO95980 971 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 LMNB1P20700 586 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 LIG3P49916 1009 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 ZNF252P-AS1Q0IIN9 211 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 AKAP4Q5JQC9 854 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 RASIP1Q5U651 963 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 SMG8Q8ND04 991 aaKnown RBP8.49□□□□□ -1.05
SCFD1-211ENST00000554437 ACSBG1Q96GR2 724 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 MEGF10Q96KG7 1140 aa8.49□□□□□ -1.05
SCFD1-211ENST00000554437 F6X3S4 739 aa8.48□□□□□ -1.05
SCFD1-211ENST00000554437 AOC2O75106 756 aa8.48□□□□□ -1.05
SCFD1-211ENST00000554437 MPRIPQ6WCQ1 1025 aa8.48□□□□□ -1.05
SCFD1-211ENST00000554437 Q6ZS46 218 aa8.48□□□□□ -1.05
SCFD1-211ENST00000554437 RELL1Q8IUW5 271 aa8.48□□□□□ -1.05
SCFD1-211ENST00000554437 WDR89Q96FK6 387 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-211ENST00000554437 UBL7Q96S82 380 aaPredicted RBP8.48□□□□□ -1.05
SCFD1-211ENST00000554437 SUGCTQ9HAC7 445 aa8.48□□□□□ -1.05
SCFD1-211ENST00000554437 ZNF862O60290 1169 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 SLFN14P0C7P3 912 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 DRD2P14416 443 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 ZNF76P36508 570 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 RPS26P62854 115 aaKnown RBP8.47□□□□□ -1.05
SCFD1-211ENST00000554437 LCE3BQ5TA77 95 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 DZIP1LQ8IYY4 767 aaKnown RBP8.47□□□□□ -1.05
SCFD1-211ENST00000554437 GPBAR1Q8TDU6 330 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 WDR18Q9BV38 432 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 GGT7Q9UJ14 662 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 TLR6Q9Y2C9 796 aa8.47□□□□□ -1.05
SCFD1-211ENST00000554437 SCAMP3O14828 347 aaKnown RBP8.46□□□□□ -1.06
SCFD1-211ENST00000554437 TRIM37O94972 964 aa8.46□□□□□ -1.06
SCFD1-211ENST00000554437 GBP2P32456 591 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-211ENST00000554437 PREPP48147 710 aa8.46□□□□□ -1.06
SCFD1-211ENST00000554437 SOX4Q06945 474 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-211ENST00000554437 AGMOQ6ZNB7 445 aa8.46□□□□□ -1.06
SCFD1-211ENST00000554437 HS2ST1Q7LGA3 356 aa8.46□□□□□ -1.06
SCFD1-211ENST00000554437 RSRP1Q9BUV0 290 aa8.46□□□□□ -1.06
SCFD1-211ENST00000554437 GAS2O43903 313 aaKnown RBP8.45□□□□□ -1.06
SCFD1-211ENST00000554437 TIAF1O95411 115 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 FURINP09958 794 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 PWP1Q13610 501 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 DOC2BQ14184 412 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 KIF4BQ2VIQ3 1234 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 PHC3Q8NDX5 983 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 TP53INP1Q96A56 240 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 SSBP4Q9BWG4 385 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-211ENST00000554437 METTL5Q9NRN9 209 aaKnown RBP8.45□□□□□ -1.06
SCFD1-211ENST00000554437 AP4E1Q9UPM8 1137 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 PCDHB5Q9Y5E4 795 aa8.45□□□□□ -1.06
SCFD1-211ENST00000554437 MINDY4BA8MYZ0 360 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 ADH5P11766 374 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 FANCCQ00597 558 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 SCARA3Q6AZY7 606 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 DYMQ7RTS9 669 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 ERMP1Q7Z2K6 904 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 RNF34Q969K3 372 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 FAM46AQ96IP4 442 aaKnown RBP8.44□□□□□ -1.06
SCFD1-211ENST00000554437 TMEM74Q96NL1 305 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 COPRSQ9NQ92 184 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 TPSG1Q9NRR2 321 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 KBTBD4Q9NVX7 518 aa8.44□□□□□ -1.06
SCFD1-211ENST00000554437 E9PSI1 815 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 TFE3P19532 575 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-211ENST00000554437 ID3Q02535 119 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 SEPT6Q14141 434 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 UVSSAQ2YD98 709 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 UTP4Q969X6 686 aaKnown RBP8.43□□□□□ -1.06
SCFD1-211ENST00000554437 MIR1-1HGQ9H1L0 117 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 CACNA2D2Q9NY47 1150 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 PPP1R9AQ9ULJ8 1098 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 PCDHA4Q9UN74 947 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 SYNGAP1Q96PV0 1343 aa8.43□□□□□ -1.06
SCFD1-211ENST00000554437 USP11P51784 963 aa8.42□□□□□ -1.06
SCFD1-211ENST00000554437 PTPN11Q06124 597 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-211ENST00000554437 C2CD4AQ8NCU7 369 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-211ENST00000554437 JARID2Q92833 1246 aaPredicted RBP8.42□□□□□ -1.06
SCFD1-211ENST00000554437 KRTAP4-12Q9BQ66 201 aa8.42□□□□□ -1.06
SCFD1-211ENST00000554437 TMPRSS2O15393 492 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 PF4P02776 101 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 BMP3P12645 472 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 LMNB2Q03252 620 aa8.41□□□□□ -1.06
SCFD1-211ENST00000554437 CAMK2GQ13555 558 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-211ENST00000554437 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms