RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MKRN1Q9UHC7 482 aaKnown RBP11.51□□□□□ -0.57
LIMA1-211ENST00000552338 DAGLAQ9Y4D2 1042 aa11.51□□□□□ -0.57
LIMA1-211ENST00000552338 DDX60LQ5H9U9 1706 aaKnown RBP11.5□□□□□ -0.57
LIMA1-211ENST00000552338 PATL2C9JE40 543 aaKnown RBP11.5□□□□□ -0.57
LIMA1-211ENST00000552338 M0R2C6 588 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 FOXP2O15409 715 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 GPAA1O43292 621 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 BAG3O95817 575 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 USP17L8P0C7I0 530 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 HSPD1P10809 573 aaKnown RBP11.5□□□□□ -0.57
LIMA1-211ENST00000552338 CRKP46108 304 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 TSGA10IPQ3SY00 556 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 SLFNL1Q499Z3 407 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 FKBP1CQ5VVH2 108 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 SEC62Q99442 399 aaKnown RBP11.5□□□□□ -0.57
LIMA1-211ENST00000552338 MXD3Q9BW11 206 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 HDAC9Q9UKV0 1011 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 TAOK2Q9UL54 1235 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 JAG2Q9Y219 1238 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 LAMA4Q16363 1823 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 ZNF541Q9H0D2 1346 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 MYH1P12882 1939 aa11.5□□□□□ -0.57
LIMA1-211ENST00000552338 ADAMTSL1Q8N6G6 1762 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 MAGEB6P1A0A0J9YX57 407 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 GLTPD2A6NH11 291 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 SEC24BO95487 1268 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 SCNN1DP51172 638 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 NECTIN1Q15223 517 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 DIXDC1Q155Q3 683 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 DPY19L2Q6NUT2 758 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 KIAA0825Q8IV33 1275 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 OGFOD1Q8N543 542 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 IL27Q8NEV9 243 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 AIDAQ96BJ3 306 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 IDI2Q9BXS1 227 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 ATP8A2Q9NTI2 1148 aa11.49□□□□□ -0.57
LIMA1-211ENST00000552338 BAZ2AQ9UIF9 1905 aaKnown RBP11.48□□□□□ -0.57
LIMA1-211ENST00000552338 SPDYE2BA6NHP3 402 aa11.48□□□□□ -0.57
LIMA1-211ENST00000552338 GSG1L2A8MUP6 293 aa11.48□□□□□ -0.57
LIMA1-211ENST00000552338 SPDYE6P0CI01 402 aa11.48□□□□□ -0.57
LIMA1-211ENST00000552338 RBM25P49756 843 aaKnown RBP11.48□□□□□ -0.57
LIMA1-211ENST00000552338 LCORLQ8N3X6 602 aa11.48□□□□□ -0.57
LIMA1-211ENST00000552338 GPRC5DQ9NZD1 345 aa11.48□□□□□ -0.57
LIMA1-211ENST00000552338 CNOT7Q9UIV1 285 aaKnown RBP11.48□□□□□ -0.57
LIMA1-211ENST00000552338 ZBTB12Q9Y330 459 aaPredicted RBP11.48□□□□□ -0.57
LIMA1-211ENST00000552338 COL2A1P02458 1487 aaPredicted RBP11.48□□□□□ -0.57
LIMA1-211ENST00000552338 POLR2AP24928 1970 aaKnown RBP11.47□□□□□ -0.57
LIMA1-211ENST00000552338 LAMB1P07942 1786 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 MBD4O95243 580 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 HSPA4P34932 840 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 BTDP43251 543 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 GMPSP49915 693 aaPredicted RBP11.47□□□□□ -0.57
LIMA1-211ENST00000552338 PTH1RQ03431 593 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 CFAP100Q494V2 611 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 SBK1Q52WX2 424 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 IFNL3Q8IZI9 196 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 FBXW7Q969H0 707 aa11.47□□□□□ -0.57
LIMA1-211ENST00000552338 CRNKL1Q9BZJ0 848 aaKnown RBP11.47□□□□□ -0.57
LIMA1-211ENST00000552338 AATFQ9NY61 560 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIMA1-211ENST00000552338 NAV1Q8NEY1 1877 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 UTRNP46939 3433 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 WNT10BO00744 389 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 WDHD1O75717 1129 aaPredicted RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 DDNO94850 711 aaPredicted RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 FGAP02671 866 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 NT5C2P49902 561 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 ANAPC15P60006 121 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 DYNLL1P63167 89 aaKnown RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 SPDYE2Q495Y8 402 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 VPS53Q5VIR6 699 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 CDC42EP5Q6NZY7 148 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 SAMD1Q6SPF0 538 aaPredicted RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 CCDC129Q6ZRS4 1044 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 KIAA1211Q6ZU35 1233 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 PRMT6Q96LA8 375 aaPredicted RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 NOL10Q9BSC4 688 aaKnown RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 ARMT1Q9H993 441 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 MYOZ2Q9NPC6 264 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 DCP1AQ9NPI6 582 aaPredicted RBP11.46□□□□□ -0.57
LIMA1-211ENST00000552338 PGAP2Q9UHJ9 254 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 CTNNA3Q9UI47 895 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 ANAPC4Q9UJX5 808 aa11.46□□□□□ -0.57
LIMA1-211ENST00000552338 SRCAPQ6ZRS2 3230 aa11.46□□□□□ -0.58
LIMA1-211ENST00000552338 F8W031 263 aaPredicted RBP11.45□□□□□ -0.58
LIMA1-211ENST00000552338 H7C1D1 291 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 ENTPD3O75355 529 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 FGRP09769 529 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 DLGAP5Q15398 846 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 FAM83AQ86UY5 434 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 MICALL2Q8IY33 904 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 MIGA1Q8NAN2 632 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 TBC1D32Q96NH3 1257 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 EPB41L4AQ9HCS5 686 aaPredicted RBP11.45□□□□□ -0.58
LIMA1-211ENST00000552338 ANO2Q9NQ90 1003 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 SLC4A4Q9Y6R1 1079 aa11.45□□□□□ -0.58
LIMA1-211ENST00000552338 ATRNL1Q5VV63 1379 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 PITPNM2Q9BZ72 1349 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 POTECB2RU33 542 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 PCP11498 1178 aaKnown RBP11.44□□□□□ -0.58
LIMA1-211ENST00000552338 METTL16Q86W50 562 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms