RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 TTC19Q6DKK2 380 aaPredicted RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 CCDC129Q6ZRS4 1044 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 RPAINQ86UA6 219 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 MSANTD4Q8NCY6 345 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 SMARCC1Q92922 1105 aaPredicted RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 ECM2O94769 699 aaPredicted RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 SATB1Q01826 763 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 AKAP17AQ02040 695 aaKnown RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 HSP90AB4PQ58FF6 505 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 CPLX2Q6PUV4 134 aaKnown RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 TC2NQ8N9U0 490 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 CPLX3Q8WVH0 158 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 NDUFB9Q9Y6M9 179 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 ZNF142P52746 1687 aaPredicted RBP16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 NFAT5O94916 1531 aa16.37■□□□□ 0.21
RAPGEF3-216ENST00000547856 GBP6Q6ZN66 633 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 NOA1Q8NC60 698 aaKnown RBP16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 SMARCC2Q8TAQ2 1214 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 IP6K1Q92551 441 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 ACBD3Q9H3P7 528 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 SAMM50Q9Y512 469 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 RGPD2P0DJD1 1756 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 USP42Q9H9J4 1324 aaKnown RBP16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 POTEB2H3BUK9 544 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 EBAG9O00559 213 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 IKBKBO14920 756 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 STX10O60499 249 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 MARCKSP29966 332 aaPredicted RBP16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 PNOCQ13519 176 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 CHST3Q7LGC8 479 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 LINC00301Q8NCQ3 95 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 GIMAP7Q8NHV1 300 aa16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 ALDH8A1Q9H2A2 487 aaPredicted RBP16.36■□□□□ 0.21
RAPGEF3-216ENST00000547856 PFKFB1P16118 471 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 CACNA1FO60840 1977 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 MYO1FO00160 1098 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 ANXA1P04083 346 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 INPP5BP32019 993 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 KAT14Q9H8E8 782 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 CD248Q9HCU0 757 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 GJB4Q9NTQ9 266 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 CAPN7Q9Y6W3 813 aa16.35■□□□□ 0.21
RAPGEF3-216ENST00000547856 CCDC189A1A4V9 331 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 SPTLC2O15270 562 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 KIF5CO60282 957 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 TAF5LO75529 589 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 CCDC175P0C221 793 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 ATP2B2Q01814 1243 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 HDGFL1Q5TGJ6 251 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 CDC5LQ99459 802 aaKnown RBP16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 CTAGE15A4D2H0 777 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 H0YHG0 523 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 ZMYND10O75800 440 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 CTAGE8P0CG41 777 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 USP8P40818 1118 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 SETQ01105 290 aaPredicted RBP16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 CTAGE6Q86UF2 777 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 CTAGE4Q8IX94 777 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 HINFPQ9BQA5 517 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 FAM107BQ9H098 131 aa16.34■□□□□ 0.21
RAPGEF3-216ENST00000547856 HIP1O00291 1037 aa16.33■□□□□ 0.21
RAPGEF3-216ENST00000547856 ABL1P00519 1130 aa16.33■□□□□ 0.21
RAPGEF3-216ENST00000547856 EAF2Q96CJ1 260 aaPredicted RBP16.33■□□□□ 0.21
RAPGEF3-216ENST00000547856 RTEL1Q9NZ71 1219 aa16.33■□□□□ 0.21
RAPGEF3-216ENST00000547856 HMG20BQ9P0W2 317 aa16.33■□□□□ 0.21
RAPGEF3-216ENST00000547856 A0A1W2PQ27 194 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 A0A1W2PQ64 194 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 A0A1W2PQD8 194 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 NCAPH2Q6IBW4 605 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 SLC35F6Q8N357 371 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 BCAS4Q8TDM0 211 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 ORAI2Q96SN7 254 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 GBP3Q9H0R5 595 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 LGR6Q9HBX8 967 aa16.33■□□□□ 0.2
RAPGEF3-216ENST00000547856 PFKFB2O60825 505 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 PRPF6O94906 941 aaKnown RBP16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 CYP21A2P08686 494 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 OLFM4Q6UX06 510 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 CTAGE9A4FU28 777 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 PI4KAP2A4QPH2 592 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 GGCXP38435 758 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 PDE4BQ07343 736 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 LRCH2Q5VUJ6 765 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 SPECC1LQ69YQ0 1117 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 RAD9BQ6WBX8 426 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 GSPT2Q8IYD1 628 aaKnown RBP16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 PI4KAP1Q8N8J0 262 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 LRRC59Q96AG4 307 aaKnown RBP16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 CDHR2Q9BYE9 1310 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 TBX2Q13207 712 aaPredicted RBP16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 KRT32Q14532 448 aa16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 TRMT44Q8IYL2 757 aaKnown RBP16.32■□□□□ 0.2
RAPGEF3-216ENST00000547856 CEMIPQ8WUJ3 1361 aa16.31■□□□□ 0.2
RAPGEF3-216ENST00000547856 CDC27P30260 824 aa16.31■□□□□ 0.2
RAPGEF3-216ENST00000547856 IRAK1P51617 712 aa16.31■□□□□ 0.2
RAPGEF3-216ENST00000547856 TEFQ10587 303 aa16.31■□□□□ 0.2
RAPGEF3-216ENST00000547856 SLC24A3Q9HC58 644 aa16.31■□□□□ 0.2
RAPGEF3-216ENST00000547856 BABAM1Q9NWV8 329 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms