RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 SEMA3EO15041 775 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 ZBTB22O15209 634 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 SOX10P56693 466 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 TCP10Q12799 353 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 CRHR2Q13324 411 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 RASGRF1Q13972 1273 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 TMEM57Q8N5G2 664 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 BRI3BPQ8WY22 251 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 XAGE2Q96GT9 111 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 USP40Q9NVE5 1235 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 CSADQ9Y600 493 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 SNCAIPQ9Y6H5 919 aa16.56■□□□□ 0.24
CPSF6-204ENST00000547486 GNAI2P04899 355 aa16.55■□□□□ 0.24
CPSF6-204ENST00000547486 ZFPM1Q8IX07 1006 aa16.55■□□□□ 0.24
CPSF6-204ENST00000547486 FAM151AQ8WW52 585 aa16.55■□□□□ 0.24
CPSF6-204ENST00000547486 OTUD5Q96G74 571 aa16.55■□□□□ 0.24
CPSF6-204ENST00000547486 WRNIP1Q96S55 665 aa16.55■□□□□ 0.24
CPSF6-204ENST00000547486 FAM198AQ9UFP1 575 aa16.55■□□□□ 0.24
CPSF6-204ENST00000547486 SPDYE5A6NIY4 337 aa16.54■□□□□ 0.24
CPSF6-204ENST00000547486 CAP1Q01518 475 aa16.54■□□□□ 0.24
CPSF6-204ENST00000547486 ZKSCAN2Q63HK3 967 aa16.54■□□□□ 0.24
CPSF6-204ENST00000547486 OTUD7BQ6GQQ9 843 aa16.54■□□□□ 0.24
CPSF6-204ENST00000547486 FBXO46Q6PJ61 603 aaPredicted RBP16.54■□□□□ 0.24
CPSF6-204ENST00000547486 AKAP2Q9Y2D5 859 aa16.54■□□□□ 0.24
CPSF6-204ENST00000547486 CCL15-CCL14A0A0B4J2E2 113 aa16.53■□□□□ 0.24
CPSF6-204ENST00000547486 GTF2A2P52657 109 aa16.53■□□□□ 0.24
CPSF6-204ENST00000547486 CCL15Q16663 113 aa16.53■□□□□ 0.24
CPSF6-204ENST00000547486 FAM43AQ8N2R8 423 aa16.53■□□□□ 0.24
CPSF6-204ENST00000547486 NEUROD6Q96NK8 337 aa16.53■□□□□ 0.24
CPSF6-204ENST00000547486 IRF6O14896 467 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 INPP5BP32019 993 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 DCAF15Q66K64 600 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 OTOP1Q7RTM1 612 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 ERO1BQ86YB8 467 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 HOOK2Q96ED9 719 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 ZNF341Q9BYN7 854 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 ABCF2Q9UG63 623 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 ZNF112Q9UJU3 913 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 TRIM17Q9Y577 477 aa16.52■□□□□ 0.24
CPSF6-204ENST00000547486 RPAP1Q9BWH6 1393 aaPredicted RBP16.51■□□□□ 0.23
CPSF6-204ENST00000547486 OTOFQ9HC10 1997 aa16.51■□□□□ 0.23
CPSF6-204ENST00000547486 GAKO14976 1311 aa16.51■□□□□ 0.23
CPSF6-204ENST00000547486 MVPQ14764 893 aaKnown RBP16.51■□□□□ 0.23
CPSF6-204ENST00000547486 PI16Q6UXB8 463 aa16.51■□□□□ 0.23
CPSF6-204ENST00000547486 CD99L2Q8TCZ2 262 aa16.51■□□□□ 0.23
CPSF6-204ENST00000547486 ZNF384Q8TF68 577 aa16.51■□□□□ 0.23
CPSF6-204ENST00000547486 HMG20BQ9P0W2 317 aa16.51■□□□□ 0.23
CPSF6-204ENST00000547486 PDS5AQ29RF7 1337 aaKnown RBP16.5■□□□□ 0.23
CPSF6-204ENST00000547486 RLBP1P12271 317 aa16.5■□□□□ 0.23
CPSF6-204ENST00000547486 ATP8B2P98198 1209 aa16.5■□□□□ 0.23
CPSF6-204ENST00000547486 SP3Q02447 781 aa16.5■□□□□ 0.23
CPSF6-204ENST00000547486 G3BP1Q13283 466 aaKnown RBP eCLIP16.5■□□□□ 0.23
CPSF6-204ENST00000547486 POLA2Q14181 598 aa16.5■□□□□ 0.23
CPSF6-204ENST00000547486 TBC1D9Q6ZT07 1266 aa16.5■□□□□ 0.23
CPSF6-204ENST00000547486 ZGPATQ8N5A5 531 aaKnown RBP16.5■□□□□ 0.23
CPSF6-204ENST00000547486 FAM163AQ96GL9 167 aaPredicted RBP16.5■□□□□ 0.23
CPSF6-204ENST00000547486 IDI2Q9BXS1 227 aa16.5■□□□□ 0.23
CPSF6-204ENST00000547486 BTBD19C9JJ37 291 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 SLURP2P0DP57 97 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 RGS3P49796 1198 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 MECOMQ03112 1051 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 SH3BP5LQ7L8J4 393 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 DZIP1Q86YF9 867 aaKnown RBP16.49■□□□□ 0.23
CPSF6-204ENST00000547486 C1orf115Q9H7X2 142 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 LAMB1P07942 1786 aa16.49■□□□□ 0.23
CPSF6-204ENST00000547486 HTTP42858 3142 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 ZBTB7BO15156 539 aaPredicted RBP16.48■□□□□ 0.23
CPSF6-204ENST00000547486 WDHD1O75717 1129 aaPredicted RBP16.48■□□□□ 0.23
CPSF6-204ENST00000547486 CETPP11597 493 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 BTDP43251 543 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 PPATQ06203 517 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 PPIL2Q13356 520 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 SNAPC2Q13487 334 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 TAF1CQ15572 869 aaPredicted RBP16.48■□□□□ 0.23
CPSF6-204ENST00000547486 SPTY2D1Q68D10 685 aaPredicted RBP16.48■□□□□ 0.23
CPSF6-204ENST00000547486 ERICH6Q7L0X2 663 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 SPATA5Q8NB90 893 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 SSH3Q8TE77 659 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 ERO1AQ96HE7 468 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 ZFYVE28Q9HCC9 887 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 DDX4Q9NQI0 724 aaKnown RBP16.48■□□□□ 0.23
CPSF6-204ENST00000547486 PTPN22Q9Y2R2 807 aa16.48■□□□□ 0.23
CPSF6-204ENST00000547486 GPR75-ASB3A0A0A6YYF3 556 aa16.47■□□□□ 0.23
CPSF6-204ENST00000547486 DDTLA6NHG4 134 aaPredicted RBP16.47■□□□□ 0.23
CPSF6-204ENST00000547486 PHF20L1A8MW92 1017 aa16.47■□□□□ 0.23
CPSF6-204ENST00000547486 ENTPD3O75355 529 aa16.47■□□□□ 0.23
CPSF6-204ENST00000547486 ARID4AP29374 1257 aaPredicted RBP16.47■□□□□ 0.23
CPSF6-204ENST00000547486 RHBDL3P58872 404 aa16.47■□□□□ 0.23
CPSF6-204ENST00000547486 GORABQ5T7V8 394 aa16.47■□□□□ 0.23
CPSF6-204ENST00000547486 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.47■□□□□ 0.23
CPSF6-204ENST00000547486 ATRNL1Q5VV63 1379 aa16.47■□□□□ 0.23
CPSF6-204ENST00000547486 TNRC18O15417 2968 aaPredicted RBP16.47■□□□□ 0.23
CPSF6-204ENST00000547486 MROH7-TTC4A0A0A0MT08 1334 aa16.46■□□□□ 0.23
CPSF6-204ENST00000547486 MCAMP43121 646 aa16.46■□□□□ 0.23
CPSF6-204ENST00000547486 MOGSQ13724 837 aa16.46■□□□□ 0.23
CPSF6-204ENST00000547486 NOL9Q5SY16 702 aaKnown RBP16.46■□□□□ 0.23
CPSF6-204ENST00000547486 SLF2Q8IX21 1173 aa16.46■□□□□ 0.23
CPSF6-204ENST00000547486 NSUN4Q96CB9 384 aaKnown RBP16.46■□□□□ 0.23
CPSF6-204ENST00000547486 EFCC1Q9HA90 598 aa16.46■□□□□ 0.23
CPSF6-204ENST00000547486 RFX7Q2KHR2 1363 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms