RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 ARGLU1Q9NWB6 273 aaPredicted RBP16.88■□□□□ 0.29
HOXC11-202ENST00000546378 HMG20BQ9P0W2 317 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 ALDH1L1O75891 902 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 TRIM29Q14134 588 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 SCARF1Q14162 830 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 CEP126Q9P2H0 1117 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 ELP1O95163 1332 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 ZNF609O15014 1411 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 WDHD1O75717 1129 aaPredicted RBP16.88■□□□□ 0.29
HOXC11-202ENST00000546378 OAS2P29728 719 aaKnown RBP16.88■□□□□ 0.29
HOXC11-202ENST00000546378 CCT6AP40227 531 aaKnown RBP16.88■□□□□ 0.29
HOXC11-202ENST00000546378 BMS1Q14692 1282 aaKnown RBP16.88■□□□□ 0.29
HOXC11-202ENST00000546378 NCAPD2Q15021 1401 aa16.88■□□□□ 0.29
HOXC11-202ENST00000546378 OVOS2A0A0G2JMS6 1433 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 NBPF26B4DH59 902 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 ZNF213O14771 459 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 GTF2E1P29083 439 aaPredicted RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 CASQ1P31415 396 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 ZAP70P43403 619 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 NBPF14Q5TI25 921 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 NBPF10Q6P3W6 841 aaKnown RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 ILDR1Q86SU0 546 aaPredicted RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 NBPF15Q8N660 670 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 POLD4Q9HCU8 107 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 BAZ2BQ9UIF8 2168 aaKnown RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 ZMYND10O75800 440 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 PNMA6AP0CW24 399 aaPredicted RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 FDPSP14324 419 aaKnown RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 IMMTQ16891 758 aaKnown RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 RASSF8Q8NHQ8 419 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 PLIN2Q99541 437 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 PUS7LQ9H0K6 701 aaKnown RBP16.87■□□□□ 0.29
HOXC11-202ENST00000546378 TRIM66O15016 1216 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 FGAP02671 866 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 GRIN1Q05586 938 aa16.87■□□□□ 0.29
HOXC11-202ENST00000546378 MYSM1Q5VVJ2 828 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 TOGARAM2Q6ZUX3 1019 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 KBTBD3Q8NAB2 608 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 MRFAP1L1Q96HT8 127 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 VPS18Q9P253 973 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 HDAC5Q9UQL6 1122 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 CARMIL3Q8ND23 1372 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 MAST3O60307 1309 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 CCDC57Q2TAC2 916 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 NKX2-3Q8TAU0 364 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 RCOR1Q9UKL0 485 aa16.86■□□□□ 0.29
HOXC11-202ENST00000546378 CTDSPL2Q05D32 466 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 PFKFB2O60825 505 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 METAP2P50579 478 aaKnown RBP eCLIP16.85■□□□□ 0.29
HOXC11-202ENST00000546378 ANO1Q5XXA6 986 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.85■□□□□ 0.29
HOXC11-202ENST00000546378 CCDC191Q8NCU4 936 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 TFR2Q9UP52 801 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 MINDY4BA8MYZ0 360 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 CTAGE5O15320 804 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 POLR2DO15514 142 aaKnown RBP16.85■□□□□ 0.29
HOXC11-202ENST00000546378 AKAP17AQ02040 695 aaKnown RBP16.85■□□□□ 0.29
HOXC11-202ENST00000546378 KIF4BQ2VIQ3 1234 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 SLC9C2Q5TAH2 1124 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 MIGA1Q8NAN2 632 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 LINC00301Q8NCQ3 95 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 SMARCE1Q969G3 411 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 PCDHA5Q9Y5H7 936 aa16.85■□□□□ 0.29
HOXC11-202ENST00000546378 KCNQ2O43526 872 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 DHX8Q14562 1220 aaKnown RBP16.84■□□□□ 0.29
HOXC11-202ENST00000546378 DNAJC21Q5F1R6 531 aaKnown RBP16.84■□□□□ 0.29
HOXC11-202ENST00000546378 VPS37DQ86XT2 251 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 DHX58Q96C10 678 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 CAPZA3Q96KX2 299 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 CNNM1Q9NRU3 951 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 SAMSN1Q9NSI8 373 aaKnown RBP16.84■□□□□ 0.29
HOXC11-202ENST00000546378 ATG3Q9NT62 314 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 RAI14Q9P0K7 980 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 TBC1D2BQ9UPU7 963 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 MROH7-TTC4A0A0A0MT08 1334 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 GSDMDP57764 484 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 CCDC158Q5M9N0 1113 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 FMR1NBQ8N0W7 255 aaPredicted RBP16.84■□□□□ 0.29
HOXC11-202ENST00000546378 JAG2Q9Y219 1238 aa16.84■□□□□ 0.29
HOXC11-202ENST00000546378 PHRF1Q9P1Y6 1649 aaKnown RBP16.84■□□□□ 0.29
HOXC11-202ENST00000546378 ATP5JP18859 108 aa16.83■□□□□ 0.29
HOXC11-202ENST00000546378 NFE2L3Q9Y4A8 694 aa16.83■□□□□ 0.29
HOXC11-202ENST00000546378 CDC27P30260 824 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 METTL24Q5JXM2 366 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 USP49Q70CQ1 688 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 ROBO1Q9Y6N7 1651 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 HEG1Q9ULI3 1381 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 SOWAHDA6NJG2 315 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 BTBD18B2RXH4 712 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 CDC25AP30304 524 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 ETF1P62495 437 aaKnown RBP16.83■□□□□ 0.28
HOXC11-202ENST00000546378 PDE4BQ07343 736 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 NYAP1Q6ZVC0 841 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 DRC1Q96MC2 740 aa16.83■□□□□ 0.28
HOXC11-202ENST00000546378 METTL22Q9BUU2 404 aaPredicted RBP16.83■□□□□ 0.28
HOXC11-202ENST00000546378 PRDM1O75626 825 aa16.82■□□□□ 0.28
HOXC11-202ENST00000546378 NR5A1Q13285 461 aa16.82■□□□□ 0.28
HOXC11-202ENST00000546378 PSMB7Q99436 277 aa16.82■□□□□ 0.28
HOXC11-202ENST00000546378 MORC2Q9Y6X9 1032 aaPredicted RBP16.82■□□□□ 0.28
HOXC11-202ENST00000546378 STARD3NLO95772 234 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms