RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PARP9Q8IXQ6 854 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 FOXJ1Q92949 421 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 ZNF512BQ96KM6 892 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-239ENST00000545694 UTP14AQ9BVJ6 771 aaKnown RBP7.46□□□□□ -1.22
SYNE1-239ENST00000545694 SIL1Q9H173 461 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 CWC22Q9HCG8 908 aaKnown RBP7.46□□□□□ -1.22
SYNE1-239ENST00000545694 CHMP5Q9NZZ3 219 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 TRMT112Q9UI30 125 aaKnown RBP7.46□□□□□ -1.22
SYNE1-239ENST00000545694 CHMP3Q9Y3E7 222 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 SH3TC1Q8TE82 1336 aa7.46□□□□□ -1.22
SYNE1-239ENST00000545694 SCN7AQ01118 1682 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 IRS4O14654 1257 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-239ENST00000545694 CAMTA2O94983 1202 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 PTMSP20962 102 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 HSPA4P34932 840 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 WDR4P57081 412 aaKnown RBP7.45□□□□□ -1.22
SYNE1-239ENST00000545694 TFCP2Q12800 502 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 ARID5BQ14865 1188 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 TAF7LQ5H9L4 462 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 TTLL11Q8NHH1 800 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 ACSBG1Q96GR2 724 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 PURBQ96QR8 312 aaKnown RBP7.45□□□□□ -1.22
SYNE1-239ENST00000545694 HAUS7Q99871 368 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 ANTXR1Q9H6X2 564 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 ANO2Q9NQ90 1003 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 HMG20BQ9P0W2 317 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 MAP10Q9P2G4 905 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 DBNLQ9UJU6 430 aaKnown RBP7.45□□□□□ -1.22
SYNE1-239ENST00000545694 ZNF330Q9Y3S2 320 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-239ENST00000545694 AFF2P51816 1311 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 MROH5Q6ZUA9 1318 aa7.45□□□□□ -1.22
SYNE1-239ENST00000545694 ZNF609O15014 1411 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 SOBPA7XYQ1 873 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 TRIM66O15016 1216 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 SPTLC1O15269 473 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 RPS6KA4O75676 772 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 HSP90AA1P07900 732 aaKnown RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 ZFYP08048 801 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 PDIA4P13667 645 aaKnown RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 TIMP2P16035 220 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 ZKSCAN1P17029 563 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 HSPA1LP34931 641 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 ITPK1Q13572 414 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 HLFQ16534 295 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 CCDC152Q4G0S7 254 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 CCDC158Q5M9N0 1113 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 RNF20Q5VTR2 975 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 TSHZ3Q63HK5 1081 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 MRPL14Q6P1L8 145 aaKnown RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 MPNDQ8N594 471 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 FAM174AQ8TBP5 190 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 KCNB2Q92953 911 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 FAM89AQ96GI7 184 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 ARXQ96QS3 562 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 FSD1Q9BTV5 496 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 TM6SF1Q9BZW5 370 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 NYXQ9GZU5 481 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 CCDC8Q9H0W5 538 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 LRP5O75197 1615 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 DDX60Q8IY21 1712 aaKnown RBP7.44□□□□□ -1.22
SYNE1-239ENST00000545694 ARAP2Q8WZ64 1704 aa7.44□□□□□ -1.22
SYNE1-239ENST00000545694 H3BM21 787 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 IGSF3O75054 1194 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 ITGA6P23229 1130 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 PSMA5P28066 241 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 GJA5P36382 358 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 NUCB2P80303 420 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 KRT32Q14532 448 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 SLC27A3Q5K4L6 730 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 FAM196AQ6ZSG2 479 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 KBTBD3Q8NAB2 608 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 KLHDC4Q8TBB5 520 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 IRF7Q92985 503 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 INTS4Q96HW7 963 aaKnown RBP7.43□□□□□ -1.22
SYNE1-239ENST00000545694 CDC5LQ99459 802 aaKnown RBP7.43□□□□□ -1.22
SYNE1-239ENST00000545694 LSG1Q9H089 658 aaKnown RBP7.43□□□□□ -1.22
SYNE1-239ENST00000545694 BCL11AQ9H165 835 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 HELLSQ9NRZ9 838 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 NARFQ9UHQ1 456 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 TBC1D2BQ9UPU7 963 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 RIPOR2Q9Y4F9 1068 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 COL24A1Q17RW2 1714 aa7.43□□□□□ -1.22
SYNE1-239ENST00000545694 AKAP11Q9UKA4 1901 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 A0A1B0GUL7 405 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 KCNQ2O43526 872 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 ADH1CP00326 375 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 UQCRFS1P1P0C7P4 283 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 GPTP24298 496 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 DDIT3P35638 169 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 SCARF1Q14162 830 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 AGERQ15109 404 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 TTF1Q15361 905 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 DIXDC1Q155Q3 683 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 TSGA10IPQ3SY00 556 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 SLC10A5Q5PT55 438 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 GORABQ5T7V8 394 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 ZNF772Q68DY9 489 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 ZSCAN25Q6NSZ9 544 aa7.42□□□□□ -1.22
SYNE1-239ENST00000545694 TMED8Q6PL24 325 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-239ENST00000545694 CWC27Q6UX04 472 aaKnown RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms