RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 LRRC24Q50LG9 513 aa16.21■□□□□ 0.19
USP28-212ENST00000544750 ANKRD23Q86SG2 305 aa16.21■□□□□ 0.19
USP28-212ENST00000544750 SPINK5Q9NQ38 1064 aaPredicted RBP16.21■□□□□ 0.19
USP28-212ENST00000544750 RBM27Q9P2N5 1060 aaKnown RBP16.21■□□□□ 0.19
USP28-212ENST00000544750 KCNH4Q9UQ05 1017 aa16.21■□□□□ 0.19
USP28-212ENST00000544750 PHIPQ8WWQ0 1821 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 NBPF7P0C2Y1 421 aaPredicted RBP16.2■□□□□ 0.18
USP28-212ENST00000544750 OSBPP22059 807 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 INPP5BP32019 993 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 PSMC4P43686 418 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 DCAF15Q66K64 600 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 HHIPL2Q6UWX4 724 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.2■□□□□ 0.18
USP28-212ENST00000544750 HOOK2Q96ED9 719 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 SRCIN1Q9C0H9 1055 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 CPA4Q9UI42 421 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 ZNF112Q9UJU3 913 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 SUGT1Q9Y2Z0 365 aa16.2■□□□□ 0.18
USP28-212ENST00000544750 DOCK2Q92608 1830 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 PDE8BO95263 885 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 GRK4P32298 578 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 GJA8P48165 433 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 BCAMP50895 628 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 VPS37DQ86XT2 251 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 ZNF341Q9BYN7 854 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 TMOD2Q9NZR1 351 aa16.19■□□□□ 0.18
USP28-212ENST00000544750 PDHXO00330 501 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 GJB1P08034 283 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 BCRP11274 1271 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 CAVIN4Q5BKX8 364 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 MIGA2Q7L4E1 593 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 ANKRD44Q8N8A2 993 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 NKX2-3Q8TAU0 364 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 BICC1Q9H694 974 aaKnown RBP16.18■□□□□ 0.18
USP28-212ENST00000544750 MAST3O60307 1309 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 COL6A3P12111 3177 aa16.18■□□□□ 0.18
USP28-212ENST00000544750 MYH2Q9UKX2 1941 aa16.17■□□□□ 0.18
USP28-212ENST00000544750 ECM2O94769 699 aaPredicted RBP16.17■□□□□ 0.18
USP28-212ENST00000544750 CCL5P13501 91 aa16.17■□□□□ 0.18
USP28-212ENST00000544750 FGFR2P21802 821 aa16.17■□□□□ 0.18
USP28-212ENST00000544750 NOL9Q5SY16 702 aaKnown RBP16.17■□□□□ 0.18
USP28-212ENST00000544750 FAM151AQ8WW52 585 aa16.17■□□□□ 0.18
USP28-212ENST00000544750 DPF3Q92784 378 aa16.17■□□□□ 0.18
USP28-212ENST00000544750 MYPNQ86TC9 1320 aa16.17■□□□□ 0.18
USP28-212ENST00000544750 HOXD10P28358 340 aa16.16■□□□□ 0.18
USP28-212ENST00000544750 METTL24Q5JXM2 366 aa16.16■□□□□ 0.18
USP28-212ENST00000544750 GPAT2Q6NUI2 795 aa16.16■□□□□ 0.18
USP28-212ENST00000544750 SLC4A10Q6U841 1118 aa16.16■□□□□ 0.18
USP28-212ENST00000544750 RAET1EQ8TD07 263 aa16.16■□□□□ 0.18
USP28-212ENST00000544750 LAMA3Q16787 3333 aa16.16■□□□□ 0.18
USP28-212ENST00000544750 FRAT2O75474 233 aaPredicted RBP16.15■□□□□ 0.18
USP28-212ENST00000544750 FMNL1O95466 1100 aaPredicted RBP16.15■□□□□ 0.18
USP28-212ENST00000544750 ATRNL1Q5VV63 1379 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 DOCK1Q14185 1865 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 ZBTB7BO15156 539 aaPredicted RBP16.14■□□□□ 0.17
USP28-212ENST00000544750 PRKCZQ05513 592 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 NFIAQ12857 509 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 CDC42EP5Q6NZY7 148 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 KLHDC4Q8TBB5 520 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 U2AF1L4Q8WU68 220 aaKnown RBP16.14■□□□□ 0.17
USP28-212ENST00000544750 HTATIP2Q9BUP3 242 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 RNF208Q9H0X6 261 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 SALL2Q9Y467 1007 aaPredicted RBP16.14■□□□□ 0.17
USP28-212ENST00000544750 DAGLAQ9Y4D2 1042 aa16.14■□□□□ 0.17
USP28-212ENST00000544750 CXCL11O14625 94 aa16.13■□□□□ 0.17
USP28-212ENST00000544750 FAM198AQ9UFP1 575 aa16.13■□□□□ 0.17
USP28-212ENST00000544750 GABRQQ9UN88 632 aa16.13■□□□□ 0.17
USP28-212ENST00000544750 SGPL1O95470 568 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 CYP2C8P10632 490 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 UBXN2AP68543 259 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 TCP10Q12799 353 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 PUM3Q15397 648 aaKnown RBP16.12■□□□□ 0.17
USP28-212ENST00000544750 SLAIN1Q8ND83 568 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 WDR66Q8TBY9 1149 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 PARK7Q99497 189 aaKnown RBP16.12■□□□□ 0.17
USP28-212ENST00000544750 UNC93B1Q9H1C4 597 aa16.12■□□□□ 0.17
USP28-212ENST00000544750 A0A0G2JLL6 359 aaPredicted RBP16.11■□□□□ 0.17
USP28-212ENST00000544750 A0A1W2PPC1 479 aa16.11■□□□□ 0.17
USP28-212ENST00000544750 PHF20L1A8MW92 1017 aa16.11■□□□□ 0.17
USP28-212ENST00000544750 FARP2O94887 1054 aaPredicted RBP16.11■□□□□ 0.17
USP28-212ENST00000544750 IFIT1P09914 478 aaKnown RBP16.11■□□□□ 0.17
USP28-212ENST00000544750 RFX5P48382 616 aaPredicted RBP16.11■□□□□ 0.17
USP28-212ENST00000544750 FCGRTP55899 365 aa16.11■□□□□ 0.17
USP28-212ENST00000544750 DIXDC1Q155Q3 683 aa16.11■□□□□ 0.17
USP28-212ENST00000544750 PRRT2Q7Z6L0 340 aaPredicted RBP16.11■□□□□ 0.17
USP28-212ENST00000544750 ZFPM1Q8IX07 1006 aa16.11■□□□□ 0.17
USP28-212ENST00000544750 NR2E3Q9Y5X4 410 aa16.11■□□□□ 0.17
USP28-212ENST00000544750 PRDX5P30044 214 aa16.1■□□□□ 0.17
USP28-212ENST00000544750 MAP3K10Q02779 954 aa16.1■□□□□ 0.17
USP28-212ENST00000544750 BIN2Q9UBW5 565 aaPredicted RBP16.1■□□□□ 0.17
USP28-212ENST00000544750 RFX7Q2KHR2 1363 aa16.1■□□□□ 0.17
USP28-212ENST00000544750 SOX1O00570 391 aaPredicted RBP16.09■□□□□ 0.17
USP28-212ENST00000544750 ANP32CO43423 234 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 ADCY3O60266 1144 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 ATG9AQ7Z3C6 839 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 PXYLP1Q8TE99 480 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 LPIN2Q92539 896 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 USP44Q9H0E7 712 aa16.09■□□□□ 0.17
USP28-212ENST00000544750 SLC45A1Q9Y2W3 748 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms