RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NAA16Q6N069 864 aaPredicted RBP16.13■□□□□ 0.17
LIMS1-215ENST00000544547 WASF1Q92558 559 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 LRP2BPQ9P2M1 347 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 QRICH2Q9H0J4 1663 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 GOLGA6BA6NDN3 693 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 CHRNA2Q15822 529 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 CCDC121Q6ZUS5 278 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 TTC14Q96N46 770 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 CLIC4Q9Y696 253 aa16.13■□□□□ 0.17
LIMS1-215ENST00000544547 IFFO1Q0D2I5 559 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 HPDP32754 393 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-215ENST00000544547 SCRN1Q12765 414 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 TMEM67Q5HYA8 995 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 SND1Q7KZF4 910 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIMS1-215ENST00000544547 TAF4BQ92750 862 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 CCDC151A5D8V7 595 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 POLR2DO15514 142 aaKnown RBP16.12■□□□□ 0.17
LIMS1-215ENST00000544547 E4F1Q66K89 784 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-215ENST00000544547 ZHX3Q9H4I2 956 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 MAPK8IP1Q9UQF2 711 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 SAMM50Q9Y512 469 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 PHLPP2Q6ZVD8 1323 aa16.12■□□□□ 0.17
LIMS1-215ENST00000544547 AKR1B10O60218 316 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 TIMM10P62072 90 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 CCDC178Q5BJE1 867 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 BRAPQ7Z569 592 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 AIDAQ96BJ3 306 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 MYO1BO43795 1136 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 TUBBP07437 444 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 ABCB6Q9NP58 842 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 ABCC3O15438 1527 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 MTIF2P46199 727 aaKnown RBP16.11■□□□□ 0.17
LIMS1-215ENST00000544547 CCZ1BP86790 482 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 CCZ1P86791 482 aaPredicted RBP16.11■□□□□ 0.17
LIMS1-215ENST00000544547 BEND3Q5T5X7 828 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 BICDL1Q6ZP65 573 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 SRGAP1Q7Z6B7 1085 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 CTAGE1Q96RT6 745 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 DBNDD2Q9BQY9 259 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 MAGEA9P43362 315 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 ATP1A2P50993 1020 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 GNGT1P63211 74 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 PROSER3Q2NL68 480 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 SARM1Q6SZW1 724 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 SRLQ86TD4 932 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 MAP4K1Q92918 833 aa16.11■□□□□ 0.17
LIMS1-215ENST00000544547 LLPHQ9BRT6 129 aaKnown RBP16.11■□□□□ 0.17
LIMS1-215ENST00000544547 UBXN1Q04323 297 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 FRMD3A2A2Y4 597 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 RNMTO43148 476 aaKnown RBP16.1■□□□□ 0.17
LIMS1-215ENST00000544547 MYSM1Q5VVJ2 828 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 CNGA4Q8IV77 575 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 CNKSR2Q8WXI2 1034 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 PPP1R1BQ9UD71 204 aaPredicted RBP16.1■□□□□ 0.17
LIMS1-215ENST00000544547 KRT86O43790 486 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 RNF40O75150 1001 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 PLA2G4AP47712 749 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 TUBB4BP68371 445 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 METTL24Q5JXM2 366 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 CACNA2D4Q7Z3S7 1137 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 STAMQ92783 540 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 MLH3Q9UHC1 1453 aa16.1■□□□□ 0.17
LIMS1-215ENST00000544547 ZBTB43O43298 467 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 CLNS1AP54105 237 aaKnown RBP16.09■□□□□ 0.17
LIMS1-215ENST00000544547 SOGA3Q5TF21 947 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 KANK3Q6NY19 840 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 FAM71BQ8TC56 605 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 CLIC6Q96NY7 704 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 PRAMEF22A3QJZ6 481 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 CLGNO14967 610 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 NEBLO76041 1014 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 STARD3NLO95772 234 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 ANKRD18AQ8IVF6 992 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 DYDC1Q8WWB3 177 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 JPH2Q9BR39 696 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-215ENST00000544547 GOPCQ9HD26 462 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 TLR7Q9NYK1 1049 aaKnown RBP16.09■□□□□ 0.17
LIMS1-215ENST00000544547 RCOR1Q9UKL0 485 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 MINDY4BA8MYZ0 360 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 KRT9P35527 623 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 ARMCX5Q6P1M9 558 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 ZNF589Q86UQ0 364 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-215ENST00000544547 LUC7LQ9NQ29 371 aaKnown RBP16.09■□□□□ 0.17
LIMS1-215ENST00000544547 FBXO3Q9UK99 471 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 IDEP14735 1019 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 RESTQ13127 1097 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 PI4K2BQ8TCG2 481 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 IP6K1Q92551 441 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 TRIM47Q96LD4 638 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 NAPBQ9H115 298 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 CDC23Q9UJX2 597 aa16.09■□□□□ 0.17
LIMS1-215ENST00000544547 ADGRB3O60242 1522 aa16.08■□□□□ 0.17
LIMS1-215ENST00000544547 ENC1O14682 589 aa16.08■□□□□ 0.17
LIMS1-215ENST00000544547 KIF5AQ12840 1032 aa16.08■□□□□ 0.17
LIMS1-215ENST00000544547 SLC35F6Q8N357 371 aa16.08■□□□□ 0.17
LIMS1-215ENST00000544547 GOLPH3LQ9H4A5 285 aa16.08■□□□□ 0.17
LIMS1-215ENST00000544547 CYLC1P35663 651 aaPredicted RBP16.08■□□□□ 0.16
LIMS1-215ENST00000544547 RNASE9P60153 205 aaKnown RBP16.08■□□□□ 0.16
LIMS1-215ENST00000544547 CFAP58Q5T655 872 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms